Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun1g03082 | ATGTTGTTCACCATTTTGCAAAGTTTGTCAAGTTGCAGGAACACTCAGAATCAAGATCACTTCTTCTTCTATTTCACTTACACAATGCCATTCATCTCCAAAATTCAGCGCCAATCTGATTACACCCTCTTCAGCTCCGCCACCCCCATCGTCATCGACAATGGTGCCTCCTATTTCCGTATTGGATGGGCTGGCGAGACTCAACCTCGTGTTGTTTTCCGCAGCATTGTCCAACGGCCACGCCACAAAGCTACTGGAGAAATTGTCACTATTGTTGGTGACCATGATCCATCATTAATGAAATACTTCGACTGTAGTCGCTCTGGACCACGCTCAGCGTTTGACAGCAATGTAGTTTACCAATTTGAAATGATGGAATATATTTTGGACTTTGGATTTGACCGGTTGGGAGCCACAGGATCAGAGATTGATCATCCTGTCCTGATCACTGAATGTGTATGCAACCCAATACAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACATATGGAGTTCCATCTATAGCCTTTGGTGTTGATGCGGCATTCAGCTATAAATATAATCAACAACATGGTGTTTGTGATAAAGATGGCCTTGCTTTGTGTCCTGGATTCAATACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCTATATATAAAGGATGTTGCCGAACCAATGTTGGTGGGTTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAGTATCCTTATCATATGGCAAGATTTACATGGGAAAAGGTTGACGACCTGAAGATGGAACATTGTTATATTGCACCAGATTATGCTTCTGAAGCTCGACTGTTTCAGAAAAAATCTAAGGAGGCTAAAGAAAAAACCAGATGCTGGCAGCTCCCATGGGTTCCACCCCCTACTGAGGAGCCCCCTTCTGAGGAAGAGATTGCTAGAAAGGCAGCTATAAGAGAAAGACAGGGTCAAAGATTACGTGAAATGGCTGAGGCAAAGAGGTCCTCTAGAATAAACGAATTGGAAAATGAATTGCATGGTTTGGAGTTTCTTCTAAAACAGCTTGAACAAGTTGAAGACAGTGATATTCCATCTTTCCTTGCAGAGACTGGTTATGTCTCCAGGCAGGAGATAGAATCTGCCCGCATTAAAGTTACGCAATCTTTACGTAAAGCAAAAGGTGAACCAAAGAGTGAACAAGCTGAAACTGAAAAGCCTGACTCTGCCGCTAACGAAAAGTATTCTCTTATAAACATCCCTGATGACATGCTCTCCCCTGAACAGCTAGTTGAAAAAAAGAAACAGTTTTCACTGAAATCCATGTCGGATGGACGACAGCGAATGAAGCAGAAGCGTTATGAAGAGGAACTGGAGCGAGAAAGGAAACAACAGTTAGAGGAGGAAAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAGTACAAAGACCTTTCAGAGAAAGTTGAGCAGCGAAAACGGCTCAAGACAAACGGAGATCATTCGAATGGAAATAACTTGTCCGGTGGCATTGGTCGGGGTGAGAGACTCAGTGCTGCTCAGAGGGAGAGAATGCGCCTCTTAACAACTGCTGCCTTTGATCGCGGTAAGGGTGAAGATACATTCGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAACGATGATGGTGATGAAGGACCAGATGAGGATGACACTGAGCTAGCTCGCATCTCCTCCAAGCTGCAGGATTTGGATCCAACTTTCGTGCCCAAGTCAGAAAATGGTAGCTCTCAACCTGCTGAGGCATCACGTGTTCGTCCTTTAACCAAGGAAGATTTTCAAATTGTTTTCGGTGTGGAAAGGTTCCGATGCCCTGAGATTTTGTTCAATCCAAACTGGATCGCCGTTGATCAAGCAGGGCTAGATGAGATGGCTGGGGTCTCAATAAGAAGGTTATCGTGTAAGGACAAAGGCCTAGAACAGAGACTCACAAACTCCATACTTGTGACCGGTGGAAGTTCTATTTTCCCCGGCATCATTGAACGCCTCGAAGCCGGAATTAGGATGATTCGACCATGTGGATCACCCATTAAGGTTGTCAGAGCATTGGATCCTATTATGGATGCATGGCGTGGCGCTGCTGAATATGCAACAATCCCACAATTCCACACCCAAACCTTCACGAGAATGGACTATTTTGAAAAGGGTGAAGACTGGCTCCGCAGTTATCAACTAAAATATTCATTGTAA | 2253 | 0.4394 | MLFTILQSLSSCRNTQNQDHFFFYFTYTMPFISKIQRQSDYTLFSSATPIVIDNGASYFRIGWAGETQPRVVFRSIVQRPRHKATGEIVTIVGDHDPSLMKYFDCSRSGPRSAFDSNVVYQFEMMEYILDFGFDRLGATGSEIDHPVLITECVCNPIQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQHGVCDKDGLALCPGFNTTHVIPFVDGEPIYKGCCRTNVGGFHVTDYLKQLLSLKYPYHMARFTWEKVDDLKMEHCYIAPDYASEARLFQKKSKEAKEKTRCWQLPWVPPPTEEPPSEEEIARKAAIRERQGQRLREMAEAKRSSRINELENELHGLEFLLKQLEQVEDSDIPSFLAETGYVSRQEIESARIKVTQSLRKAKGEPKSEQAETEKPDSAANEKYSLINIPDDMLSPEQLVEKKKQFSLKSMSDGRQRMKQKRYEEELERERKQQLEEEKRLENPELYLEQLRAKYKDLSEKVEQRKRLKTNGDHSNGNNLSGGIGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDGDEGPDEDDTELARISSKLQDLDPTFVPKSENGSSQPAEASRVRPLTKEDFQIVFGVERFRCPEILFNPNWIAVDQAGLDEMAGVSIRRLSCKDKGLEQRLTNSILVTGGSSIFPGIIERLEAGIRMIRPCGSPIKVVRALDPIMDAWRGAAEYATIPQFHTQTFTRMDYFEKGEDWLRSYQLKYSL | 750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun1g03082 | 750 | Coils | Coil | 446 | 473 | - | - | |
| Viun1g03082 | 750 | MobiDBLite | consensus disorder prediction | 586 | 606 | - | - | |
| Viun1g03082 | 750 | PANTHER | ACTIN | 49 | 738 | IPR004000 | - | |
| Viun1g03082 | 750 | Gene3D | - | 180 | 234 | - | - | |
| Viun1g03082 | 750 | MobiDBLite | consensus disorder prediction | 388 | 411 | - | - | |
| Viun1g03082 | 750 | Coils | Coil | 477 | 497 | - | - | |
| Viun1g03082 | 750 | MobiDBLite | consensus disorder prediction | 590 | 604 | - | - | |
| Viun1g03082 | 750 | CDD | NBD_sugar-kinase_HSP70_actin | 50 | 230 | - | - | |
| Viun1g03082 | 750 | FunFam | Actin-related protein 5 | 610 | 639 | - | - | |
| Viun1g03082 | 750 | FunFam | Actin-related protein 5 | 46 | 198 | - | - | |
| Viun1g03082 | 750 | SMART | actin_3 | 47 | 746 | IPR004000 | - | |
| Viun1g03082 | 750 | MobiDBLite | consensus disorder prediction | 491 | 516 | - | - | |
| Viun1g03082 | 750 | Gene3D | Actin; Chain A, domain 4 | 235 | 289 | - | - | |
| Viun1g03082 | 750 | FunFam | Actin-related protein 5 | 199 | 230 | - | - | |
| Viun1g03082 | 750 | Gene3D | Actin; Chain A, domain 2 | 77 | 113 | - | - | |
| Viun1g03082 | 750 | Pfam | Actin | 615 | 742 | IPR004000 | - | |
| Viun1g03082 | 750 | Pfam | Actin | 47 | 393 | IPR004000 | - | |
| Viun1g03082 | 750 | Gene3D | - | 640 | 709 | - | - | |
| Viun1g03082 | 750 | Gene3D | - | 710 | 738 | - | - | |
| Viun1g03082 | 750 | FunFam | Actin-related protein 5 | 231 | 285 | - | - | |
| Viun1g03082 | 750 | Gene3D | Actin; Chain A, domain 4 | 552 | 639 | - | - | |
| Viun1g03082 | 750 | SUPERFAMILY | Actin-like ATPase domain | 47 | 187 | IPR043129 | - | |
| Viun1g03082 | 750 | MobiDBLite | consensus disorder prediction | 433 | 469 | - | - | |
| Viun1g03082 | 750 | FunFam | ARP5 actin-related protein 5 homolog | 640 | 709 | - | - | |
| Viun1g03082 | 750 | MobiDBLite | consensus disorder prediction | 388 | 408 | - | - | |
| Viun1g03082 | 750 | Gene3D | - | 50 | 178 | - | - | |
| Viun1g03082 | 750 | SUPERFAMILY | Actin-like ATPase domain | 198 | 742 | IPR043129 | - | |
| Viun1g03082 | 750 | Coils | Coil | 337 | 357 | - | - | |
| Viun1g03082 | 750 | FunFam | Putative actin-related protein 5 | 710 | 738 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun1g03082 | Viun-Chr1 | 39160809 | 39165825 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun1g03082 | 616 | 737 | Miscellaneous Gene Families | AT2G42100 | 33.607 | 4.44e-15 | 75.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun1g03082 | K11672 | - | gmx:100808396 | 1294.26 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun1g03082 | 1 | 39160809 | 39165825 | Viun1g03082 | 1 | 39160809 | 39165825 | ECH | |
| Viun1g03082 | 1 | 39160809 | 39165825 | Viun8g02203 | 8 | 32168033 | 32174748 | PCT |