Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02200 ATGTCTCAGTTCTCTAGCAAGGATACTGATACATCTCAAATAAGTTGGTGGTATGTAGATACATCTTACGAAGAACTCAAGAAGGGAAGTTACAATGTAAAAACCTCAGATGTGACTTTCATCTGTCCATACTGTCCTAGGAGAAAACAGGATTATTTGTACAGGGAACTCCTAGAACATGCATATATGGTGGGTCGTAGTAGTTCTGAAAAGAAAAGTGCAAGAGAGAGAGCCAATCATCTTGCGTTAGTAAAATATTTGGAAAATGATCTTATTATTGTGGATGGCCTTTCAGAACCTGTTGATAAAGGTACCAAATTAAGCTCAGGACAACCTGAAATAGCTCAATGCTCTAACAAGGAGACTGGTACGAGTGCATCTCCGCCAATAAACTGGTGGTATGTAGATAAGTTTTACAAAGAACTCAAAAAGGGAAATCATATTGTGCAATCCTCAGATGAGACTTTTTCTTGTCCATACTGCCCTAAAAAGAAAAAACAGGATTATGTGTACAGGGAACTTTTTGACCATGCTTCTGGGGTGGGTCAGAGTACTTCACAAAAGAGAAATTTCAGAGAGAAGGCTACTCATCTGGCCTTGATGAAATATTTGAAAAATGATCTCATGCACTTGAGTGATTCATCAAAATCTGTAAATGAAGGTAATCACCCAGTTACTAGAGTGGATCAGAGTAGTTCACAAGAAAGAAGAGTCAAAGAAGATGTTACTCATATGACTTTAGCAAAAGACTTGAAAAAGGATGTCATGAATGTGAGAGGTTCATCATCAAAACCTGTAAATGAAGGAACCATAATAATAAGCCCAGGAAAAACTGCAATTGGTTGCTGCTCTGACAAAGATAGCAATATGAGTTCATCTCAGATTGGGCGGTATGTAGATAAATTTTATGAAGAACTCAAAATGGGAAGACACTGTGTGAAAACCTCGGATGAGACTTTCACATGCCCATACTGCCCTAATAAAAAGATAAACCGGGATTATGTGTACAGGGAAATCCTGGAACATGCTTCTGGGGTGGGTCAGAGTAGATCACAAAAAAGAAGTTTCATTGAAAGGGCCAATCATCTGGCTTTAGAAAAATATTTGAAAAAGGATGTTATGAATGTGGGTGCTTCATTTCCATCAAAACCTATGGATCAAGGCACAATAACAGCAACCCCAGGAGAAACTGTGACGGGTCACTACTCTCATAAAGATAATAATATAAGGGCAACTCAAATAAGTGGGTGGTATGTGCATAAATCCTACGAAGCACTCAAAAAGGGAAGTCATATTGTGAAAACCTCTGAAATGACTTTCTCATGTCCATACTGCCCTAATAAAAAGAGAAAGCGGGATTATGTGTTCAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTATCTCACAAAAGAGAAGTGCCACTGAAAAGGCTAATCATTTGGCTTTAATGAAATATTTGGAAATGGATCTTATGAATGTGGATGGTACACCAAAAACTGCAGATAAAGGCAATATCCTTTTTGAGGAGCAGTTTGTGTGGCCATGGACTGGGATATTGGTTAATATTCCTACTGGACAGACAGAAGATGGACGTTGTGTTGGGGAAACTGGTTCCAAGCTGAGGGACGAACACAGAATCAGGGGATTTAATCCTTGTAGAGTCCGGACTCTTTCGGATATCCGGGGTCACTCTGGAACTGCAGTTATGGAATTTAATAAAGATTGGACTGGCTTAGCTAATGCTTTGGCATTTGAAAGAGCATATGAATTAGATCATCACGGGAAAAAGGACTGGCTTGCTAATACTGAGCAAAAGTCTGGTATTTATGCATGGATTGCTCGAGCTGATGACTACAAGACGAATAATATCATTGGGGAACAATTGCAGAAGATGGGGGATATCCAAACAATATCTGAACTCATGAAAGAAGAAGCTCGTATACATGACAAACTTGTTTCCTGCTTGAACAATACTCTTCAGGTCAAGAAGAAGCGGTTAATGGAGATGGAAGTAAAATACAATGAGACTTCACGTCGCATGGAAATTGTAATGGGGGAAATAGATAAGCTCACTCAAGACCACAATCAAGAGATGAAGAAAATACAATCAAGTGCAACTCAGCACTTCCAGAATATTTTTAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAAAGAGAGCTTGAGTTGCGGAGAATTGAACTGGAAAAACGTGAAGCACATAATGAAAGTGAAAGCAAGAAGTTGGAAGAAGAGATTATGGAGAATGCATTGAAAAATAGCTCTTTGGAAATGGCTGTTCTGGAGCAACAGAAAGCTGGTGAAAATATTTGGAAACTGGCTGCAGATCAAAAGCGGCAAAAAGAACATCTTCGTCATAAAATCATCAGGCTTGAAAAACAACTGGAAGTGAAACAAAAACTAGAATTGGAGATTCAACAACTGAAAGGAAAATTAAATGTCATGCAATACATTGAGGAAGATGAAGACTCAGAAGTTCTGAATAAGGTGGATGCCTTACACAAGCATTTAAGAGAGAAGGAACAGTCACTACGAGACCTAGATGCCCTGAACCAGACACTAATTATTAAAGAGCGTCAGAGCAATGATGAGCTACAAGAAGCTCGAAAAGAATTGATTAATGGCATTAAAGAGATATCTTGCCGTGCTGGTGTTGGTGTGAAGAGAATGGGGGAGCTTGATATTAGACCATTCCTTGAAGCTATGAAGAAAAAATACAACGATGAGGATGCAGAAGAAAGAGCTTCAGAACTGTGTTCCTTGTGGGACGAGTATATAAAGGACCCAGGGTGGCATCCATTTAAAATTACCATAATTGAAGGAAAAGATCAGGAAATCATAGACAATGAAGATGAAAAGTTGAAAGCACTGAAAAATGAGTTCGGTGAAGGAGTCTACAAAGCAGTGGTGACAGCTTTGACAGAGATCAATACATATAACCCAAGTGGGAGGTATACAACCTCTGAATTATGGAATTACGAAGAGGGAAAGAGAGCTACCTTGCAAGATGGAGTAAAATTATTATTGATGCAATATAAACTATCTAAACAGAAAAGAGGGACGGTGTAA 3105 0.3897 MSQFSSKDTDTSQISWWYVDTSYEELKKGSYNVKTSDVTFICPYCPRRKQDYLYRELLEHAYMVGRSSSEKKSARERANHLALVKYLENDLIIVDGLSEPVDKGTKLSSGQPEIAQCSNKETGTSASPPINWWYVDKFYKELKKGNHIVQSSDETFSCPYCPKKKKQDYVYRELFDHASGVGQSTSQKRNFREKATHLALMKYLKNDLMHLSDSSKSVNEGNHPVTRVDQSSSQERRVKEDVTHMTLAKDLKKDVMNVRGSSSKPVNEGTIIISPGKTAIGCCSDKDSNMSSSQIGRYVDKFYEELKMGRHCVKTSDETFTCPYCPNKKINRDYVYREILEHASGVGQSRSQKRSFIERANHLALEKYLKKDVMNVGASFPSKPMDQGTITATPGETVTGHYSHKDNNIRATQISGWYVHKSYEALKKGSHIVKTSEMTFSCPYCPNKKRKRDYVFREILEHASGVGQSISQKRSATEKANHLALMKYLEMDLMNVDGTPKTADKGNILFEEQFVWPWTGILVNIPTGQTEDGRCVGETGSKLRDEHRIRGFNPCRVRTLSDIRGHSGTAVMEFNKDWTGLANALAFERAYELDHHGKKDWLANTEQKSGIYAWIARADDYKTNNIIGEQLQKMGDIQTISELMKEEARIHDKLVSCLNNTLQVKKKRLMEMEVKYNETSRRMEIVMGEIDKLTQDHNQEMKKIQSSATQHFQNIFNGHERLKLQLESQKRELELRRIELEKREAHNESESKKLEEEIMENALKNSSLEMAVLEQQKAGENIWKLAADQKRQKEHLRHKIIRLEKQLEVKQKLELEIQQLKGKLNVMQYIEEDEDSEVLNKVDALHKHLREKEQSLRDLDALNQTLIIKERQSNDELQEARKELINGIKEISCRAGVGVKRMGELDIRPFLEAMKKKYNDEDAEERASELCSLWDEYIKDPGWHPFKITIIEGKDQEIIDNEDEKLKALKNEFGEGVYKAVVTALTEINTYNPSGRYTTSELWNYEEGKRATLQDGVKLLLMQYKLSKQKRGTV 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02200 1034 MobiDBLite consensus disorder prediction 214 240 - -
Viun8g02200 1034 CDD RRM_like_XS 514 621 IPR005380 GO:0031047
Viun8g02200 1034 Gene3D XS domain 510 677 IPR038588 -
Viun8g02200 1034 MobiDBLite consensus disorder prediction 104 124 - -
Viun8g02200 1034 MobiDBLite consensus disorder prediction 214 229 - -
Viun8g02200 1034 Coils Coil 662 682 - -
Viun8g02200 1034 PANTHER RIBONUCLEASE P SUBUNIT P38 401 1032 IPR045177 GO:0080188
Viun8g02200 1034 MobiDBLite consensus disorder prediction 109 124 - -
Viun8g02200 1034 Coils Coil 716 776 - -
Viun8g02200 1034 Coils Coil 786 830 - -
Viun8g02200 1034 Pfam XS domain 511 622 IPR005380 GO:0031047
Viun8g02200 1034 Pfam XH domain 900 1030 IPR005379 -
Viun8g02200 1034 Coils Coil 845 894 - -
Viun8g02200 1034 Pfam XS zinc finger domain 322 365 IPR005381 GO:0031047
Viun8g02200 1034 Pfam XS zinc finger domain 158 200 IPR005381 GO:0031047
Viun8g02200 1034 Pfam XS zinc finger domain 442 485 IPR005381 GO:0031047
Viun8g02200 1034 Pfam XS zinc finger domain 42 84 IPR005381 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02200 Viun-Chr8 32145270 32153261 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02200 - - gmx:100790814 1744.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02200 8 32145270 32153261 Viun8g02200 8 32145270 32153261 ECH
Viun1g03078 1 39123412 39129517 Viun8g02200 8 32145270 32153261 PCT