Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03078 ATGGCTCAAAGCAGCTCTGATGAGGATACAGATATTAGTGAATCTGAAATCAGTGAGTACGAAGATAAATCCTATGAAGAGCTGAAAAGTGGAAGTCAGAATTTAAAAACATCGAATGAGACTTTCACTTGTCCGTATTGCCCTAAAAAGAGAAAACGGGATTATTTGTACAAGGAGCTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCACAAAAGAGGAAAGCTAGAGACAAAGCTAATCATTTGGCTTTAGTGAAATATTTGGAAAAGGATCTCATGAATGTAGATGTTCCATCAAATGATTCAAAACCGGAAGATGAAAGTGATTCTTCTGTTAATTCTAATGATCAGTTTGTGTGGCCTTGGATTGGAGTTGTAGTTAATATTCCAACTAGACGGACAGAAGATGGACGCTGTGTTGGTGAGAGTGGTTCCAGACTGAGGGATGAGTATAGAAGCAGGGGTTTCAATCCAGTTCGAGTCAATCCTTTGTGGAATTTCCGGGGTCACTCCGGAACCGCTCTTGTGGAGTTCAATAAAAGCTGGCCAGGCTTAGATAATGCAATGGCATTTGAAAGAGCCTATGAATTAGATCATCATGGGAAAAAAGATTGGTTTGCTAATGATGGGCAGAAGTCTGGTCTTTATGCATGGGTTGCCCGGGCAGATGACTACAAAATGAACAGCATCTACGGAGAATATCTGCGGAAGATGGGTGATGTCAAAACCATATCTGAGCTTATGGAAGAAGAAGCTCGAAGGCAAGATAAACTTGTATCCAATTTGAATAACATTATTCAGGTCAAGAACAAGCACATAAAAGAGATTGAAGTTAGATACCATGAAACTACGGACAAAATGAACCTTGCTATGATGGAAAAAGATAATCTCATTCAATCTTATAATGAAGAGATACAGAAAATACAGTCAAGTGCCCGGGATCACTTCCAGAAGATTTTTACTGATCACGAAAAGCTCAAAATGCAACTGGAGTCTCAGAAAAATGAGCTTGAGTTACGGAAAATTGAATTAGAAAAACGTGAGGCGCACAATGAAAGTGAAAGAAAAAAGTTGGCAGAAGAAATTGAGGAGAATGCAACAAAAAATAGTTCTCTTCAGATGGCTGCTCTTGAGCAAAAGAAAGCAGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAGCAACTCCATGCTAAAATCATTCAGCTTCAGAAACAACTTGATATGAAACAAGAACTGGAGTTGGAGATTCAGCAATTAAAAGGATCTTTAAGTGTGTTGAAGCACATGGAAGATGACGAAGATGTTGAAATTCTGAAGAAAGTAGATAATTTACAAAAGGATTTAAGAGACAAGCAACAATCACTTCAAGACATTGATGCACTTAATCAAGCACTAATAGTTAAAGAGCGCGAGAGTAATGATGAGCTGCAGGAAGCTCGACAAGCATTGGTTGATGGAGTTAAAGAGTTACAACCTCATGGAAATATACGTTTGAAGAGAATGGGCGAACTTGACACAAGTCCATTCCTTGAGGCAATGAAGAAAAGATACAATGAAGATGATGCTGAAGAGAGAGCTTCAGAACAGTGCTCGTTGTGGGAAGAGTATCTAAAGGACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGATGGGAAAGAAAAGGAAATTATTAGAGATGACGATGAAAAGCTGAACGGGTTGAAAAATGACCTGGGTGAAGGTGCATATAAAGCGGTGGTGGAGGCATTGTTAGAAATAAATGAACATAACCCTAGTGGCCGGTACTTAACGTCGGTATTATGGAACTACAAACAAGGAAGGAGAGCAACTCTTAAAGAAGGAGTACAATTTCTGTTAAATTATTGGACAAAACGCAAGAGGGGAACGACATGA 1917 0.3918 MAQSSSDEDTDISESEISEYEDKSYEELKSGSQNLKTSNETFTCPYCPKKRKRDYLYKELLQHASGVGQSSSQKRKARDKANHLALVKYLEKDLMNVDVPSNDSKPEDESDSSVNSNDQFVWPWIGVVVNIPTRRTEDGRCVGESGSRLRDEYRSRGFNPVRVNPLWNFRGHSGTALVEFNKSWPGLDNAMAFERAYELDHHGKKDWFANDGQKSGLYAWVARADDYKMNSIYGEYLRKMGDVKTISELMEEEARRQDKLVSNLNNIIQVKNKHIKEIEVRYHETTDKMNLAMMEKDNLIQSYNEEIQKIQSSARDHFQKIFTDHEKLKMQLESQKNELELRKIELEKREAHNESERKKLAEEIEENATKNSSLQMAALEQKKADENVMKLAEDQKRQKEQLHAKIIQLQKQLDMKQELELEIQQLKGSLSVLKHMEDDEDVEILKKVDNLQKDLRDKQQSLQDIDALNQALIVKERESNDELQEARQALVDGVKELQPHGNIRLKRMGELDTSPFLEAMKKRYNEDDAEERASEQCSLWEEYLKDPDWHPFKVIMVDGKEKEIIRDDDEKLNGLKNDLGEGAYKAVVEALLEINEHNPSGRYLTSVLWNYKQGRRATLKEGVQFLLNYWTKRKRGTT 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03078 638 Pfam XH domain 506 635 IPR005379 -
Viun1g03078 638 Pfam XS domain 118 228 IPR005380 GO:0031047
Viun1g03078 638 Pfam XS zinc finger domain 44 87 IPR005381 GO:0031047
Viun1g03078 638 CDD RRM_like_XS 120 227 IPR005380 GO:0031047
Viun1g03078 638 MobiDBLite consensus disorder prediction 97 116 - -
Viun1g03078 638 Coils Coil 322 366 - -
Viun1g03078 638 MobiDBLite consensus disorder prediction 1 46 - -
Viun1g03078 638 MobiDBLite consensus disorder prediction 30 44 - -
Viun1g03078 638 Coils Coil 392 436 - -
Viun1g03078 638 Gene3D XS domain 112 283 IPR038588 -
Viun1g03078 638 Coils Coil 448 468 - -
Viun1g03078 638 Coils Coil 293 313 - -
Viun1g03078 638 PANTHER RIBONUCLEASE P SUBUNIT P38 5 635 IPR045177 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03078 Viun-Chr1 39123412 39129517 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03078 - - gmx:102665742 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03078 1 39123412 39129517 Viun1g03078 1 39123412 39129517 ECH
Viun1g03078 1 39123412 39129517 Viun8g02200 8 32145270 32153261 PCT