LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g01416	ATGGAAAAGAAAGAATTAGAGGAGACAGATGAGCGAAGTCCTCGGGCCGTTGGAAAGATAGAAGGGGATTTGAGTGAAGAACATAGGGAAAAACACTCAGTGCGGGCAGAAACTCAAAATGTAGACTGTGATTGCTCTGAGTTTGGGAATGATCAGCATATTGGTCATGATGCCCTCAAGTTTGATGATGAGCAGCATAGTATGCCAAACAGGGTGGATGAGGTGATAGATGTAGAGTTGAATATTCAAGAGGAAAGAAAAGACAATGTAGCCGGAGAATCTCAGTTGGGTCGGAGGTTGGGGGATAGTTGCGATTTGCTGTGTGGACCTCAACAAGAAAACTTGGAGACCGGTACGGTTCCAGATGACTTGTTTCAAAAGGATCATGATAGTGATTCCATGGAATCTGGAATTGAAGTTAGCATTGTTGGACAAGAGTGTTCAGGTGTTAAGGGAGACAGTGGAGATTTTGAGCCTAAAAGTCAAGAAGTAAGCCTAGATAATAGTTTTGTGCGGCAGGGTTTGTTCATAGAGAAGGATGACAGCAGAAGCGTGGGATCTGCACAAATGAATCAAAAAACAGAGAACACTTCAGAGGGCAATAATTTGGAGCCTGATGTTGGTGGAGCTGTGGTTCCTGGAACTGAAGCTGGCTGCAGCACATCTATGGATACTTTGCACACCAATCCGGAGAATCTACGTGGGGTTGAGAAGACAAAATCTCTTAGAGACTTTGTTAAGGAGAAAAGTATAATAGCAGTGTCCATGGTGCTTCGCCGCCTTTCTGTAAAAAGAGACGAATATACTGTGGTTAAATCTGATGACATGGGTAAGGACCCTTCATATTTATCAAGAGAAAGTGATACGAAAGAGGTTCCTGAGAAGACAGTGGAGAAAACAATTTGGAATCCCTTAAATTATATTAAAACGTCATCTGTTGATGCTGAAAATAGAACTGTCTCAAGGGAGGAACCTATAAATGAAGGTCCATCACTACCCATACCCATGAAAGGAAGGATTATATTGTACACAAGACTAGGGTGCCCAGAATGTAAAGAAGTTAGGAAATTTTTGTATATGAAAAGGCTTAGATATGTTGAAATCAACATTGATGTCTTTCCTAGTAGAAAGATGGAGCTGGAGAAGAATTCAGGATCTACTTCTATTCCCAAGGTTTTTTTCAATGGAATACTTATTGGAGGCTTGAGTACACTAAAGTCCTTAAGTGAGTCTGGCAAACTTAATGAGAAGATTGACTACCTTATTAATGAAGCACCATCATTTGAATGCCCAGTTCCGCCACTTTCTGGAGAGGATGATGTGTCCAGTAGAGGGGCGCTTGATGAAATGGCTCTAATTGTCCGCAAAATGAAAGAATGCATTGTTGTGAAGGACCGATTTTGCAAAATGCGGAGGTTTACTAACTGCTTCGTTGCTTCTGATGCTGTGGACTTCTTATCAGAAGATCAATTGTTGGAAAGGAAGGAGGCTGTTGAGTTTGCACGAAAACTTGCCAGCAAGCTCTTCTTTCAGCATGTTTTTGATGAGAATCTATTTGAGGATGGTAATCACCTATATCGGTTTTTGGATGACGATCCAACTGTGGCATCTTTTTGTTACAACATTCCGAGGGGGATAATTACTGTTAAACCTAAGCCTATGACAGAAGTTGCATCGAGGCTGAGGCTTTTGTCCTATGCAATGTTTGAAGCCTATGCCTCTGAAGATGGACGTCATGTTGATTACAGAAGTATGCATGGAAGTGAGGAGTTTGCAAGATATCTAAGAATAATAGAAGAGCTCCAAAGAGGGGAAGTATGCGATTTGTCTAGAGAAGAGAAGCTTGCTTTTTTTATTAATCTATATAATATGATGACCATCCATGCAATCTTAGTATGGGGTCACCCTTCTGGAGCACTCGAAAGAAGGAAATTATTTGAAGACTTCCAATATGTTATTGGTGGATTCACCTACTCTCTTTCGGCCATTCAAAATGGCATTTTGAGGGCGAACCAGCGACAACCATACACCCTTATGAAGCCATTCGGTGCAAAAGATAAACGTTTAAGGGTGGCCCTTCCTTTCCCGGAGTCCCTTATTCATTTTGCTTTGGTATATGGTACTCGATCAGGACCCTCACTTCGGTGCTATTCTCCCGGGGACATTGACAGAGAATTAATGGATGCAGCCCGTAATTTCTTAAGAAATGGAGGCCTTTCAATAGATTTTACTGCAAAGGTTGCACATGCCACTAAGATCCTTAAGTGGTTTAGTGTAGATTTTGGTAGAAATGAGGCAGAGGTCCTGAAGCATGTGTCAAGCTACTTACATCCTGCCGACTCAGAATTATTGTTGGACCTACTTGCCACTTCTGAGTTGAAGGTGATTTATCAGCCTTATGATTGGGGTTTGAACTGCTAG	2421	0.4168	MEKKELEETDERSPRAVGKIEGDLSEEHREKHSVRAETQNVDCDCSEFGNDQHIGHDALKFDDEQHSMPNRVDEVIDVELNIQEERKDNVAGESQLGRRLGDSCDLLCGPQQENLETGTVPDDLFQKDHDSDSMESGIEVSIVGQECSGVKGDSGDFEPKSQEVSLDNSFVRQGLFIEKDDSRSVGSAQMNQKTENTSEGNNLEPDVGGAVVPGTEAGCSTSMDTLHTNPENLRGVEKTKSLRDFVKEKSIIAVSMVLRRLSVKRDEYTVVKSDDMGKDPSYLSRESDTKEVPEKTVEKTIWNPLNYIKTSSVDAENRTVSREEPINEGPSLPIPMKGRIILYTRLGCPECKEVRKFLYMKRLRYVEINIDVFPSRKMELEKNSGSTSIPKVFFNGILIGGLSTLKSLSESGKLNEKIDYLINEAPSFECPVPPLSGEDDVSSRGALDEMALIVRKMKECIVVKDRFCKMRRFTNCFVASDAVDFLSEDQLLERKEAVEFARKLASKLFFQHVFDENLFEDGNHLYRFLDDDPTVASFCYNIPRGIITVKPKPMTEVASRLRLLSYAMFEAYASEDGRHVDYRSMHGSEEFARYLRIIEELQRGEVCDLSREEKLAFFINLYNMMTIHAILVWGHPSGALERRKLFEDFQYVIGGFTYSLSAIQNGILRANQRQPYTLMKPFGAKDKRLRVALPFPESLIHFALVYGTRSGPSLRCYSPGDIDRELMDAARNFLRNGGLSIDFTAKVAHATKILKWFSVDFGRNEAEVLKHVSSYLHPADSELLLDLLATSELKVIYQPYDWGLNC	806

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g01416	806	SUPERFAMILY	"Winged helix" DNA-binding domain	450	538	IPR036390	-
	Viun8g01416	806	ProSiteProfiles	DEP domain profile.	457	530	IPR000591	GO:0035556
	Viun8g01416	806	Pfam	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	462	528	IPR000591	GO:0035556
	Viun8g01416	806	Pfam	Glutaredoxin	340	397	IPR002109	-
	Viun8g01416	806	Pfam	Protein of unknown function, DUF547	608	734	IPR006869	-
	Viun8g01416	806	Gene3D	Glutaredoxin	336	420	-	-
	Viun8g01416	806	ProSiteProfiles	Glutaredoxin domain profile.	328	425	-	-
	Viun8g01416	806	PRINTS	Glutaredoxin signature	396	409	IPR014025	-
	Viun8g01416	806	PRINTS	Glutaredoxin signature	340	358	IPR014025	-
	Viun8g01416	806	PRINTS	Glutaredoxin signature	382	395	IPR014025	-
	Viun8g01416	806	MobiDBLite	consensus disorder prediction	184	203	-	-
	Viun8g01416	806	MobiDBLite	consensus disorder prediction	1	38	-	-
	Viun8g01416	806	SUPERFAMILY	Thioredoxin-like	338	419	IPR036249	-
	Viun8g01416	806	MobiDBLite	consensus disorder prediction	181	206	-	-
	Viun8g01416	806	Gene3D	-	443	536	IPR036388	-
	Viun8g01416	806	SMART	DEP_3	456	530	IPR000591	GO:0035556
	Viun8g01416	806	CDD	DEP	453	527	-	-
	Viun8g01416	806	PANTHER	ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE	86	806	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g01416	Viun-Chr8	22542804	22556653	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g01416	-		-	ccaj:109814814	1226.46

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun8g01416	8	22542804	22556653	Viun8g01416	8	22542804	22556653	ECH
	Viun8g01416	8	22542804	22556653	Viun9g02518	9	34272926	34277028	PCT