Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00453 ATGGCAGGAAACATGTCTGATCCAAGTGGGAGCAAGGGTGCAAATATTTTACTTAATCATGACTTTTCCAGAGGGCTGAACTCTTGGCATCTCAATTCCTGCACTGGCTATGTAATTTCAGCTGAATCGGGTGCTCAAGGAGGAATTCCGAGGGAGTTGGGTGCTAATTATGCTGTTATCACTGACAGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGAAAGAATTTCCACTGGTTACACTTACACAGTTTTGGCTTGTGTGGGAGTATCCAATCTTTCTCAGGGACCTAGTGATGTTCTAGCTACTTTGAAACTCGAATATCATGATTCGGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAGGATAGTTGGGAGAAGTTGGAAGGGAAATTCTCATTATCAACTATGCCTGATCGGGTTGTATTTTACTTGGAAGGACCTGCTCCTGGAGTTGATCTGCTCATTCGATCAGTAGAAATAAACTGTTCCACTCCGAATAATAATATCACAACCACAGCATGTGTTTCAGCGGGAGATGACAACATCATCATCAACCCGCAATTTGATGATGGTCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTGTGTTGCATGATTCCATGAATGATGGGAAAATTGTTCCAAAATCTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGAATTCAGCAAGATATCACTGGACGCGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTAAGAATTTTTGGAAACAATGTCTCTACTGCTGATGTACGTGCAACTTTGTGGGTCCAAGCACCAGATCTTAAAGAACAGTATATAGGCATTGCAAATTTGCAGGCAACAGATAAAGATTGGGTTACTCTGCAGGGAAAATTCCTTCTAAATGGTTCTCCATCAAAAGTGGTCCTTTATTTAGAGGGACCCCCTCCAGGCACTGACATTCTTCTCAATAATTTGGTCTTAAAGCATGCAGCTAAAACACCTCCTTCAACCCCACCAGATGTAAAGAATGTTACTTTTGGGGTTAATATAATTCAAAACAGCAATCTAGCTGATGGCACCAATGGATGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAAGTGGTTCACCACATATAATTCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGAACTCCTGAGTGGGAGGTACATCCTAGTAACTAATCGAACACAAACATGGATGGGTCCTGCCCAGATCATCACTGATAAAGTGAAACTCTTTTCGACTTATCAAGTGTCTGCTTGGGTCCGGATTGGCTCAGGATCATCAGGGCCACAGAATGTGAATGTTGCTCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTTTCTGATGACACGTGGCATGAAATTGGAGGGTCCTTTAGAATTGAAAAACAGCCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTGCTGGTGTGGACTTGATGGTGGCTGGACTTCAAATTTTTCCTGTGGATAGACATGCAAGATTTAGATATTTAAAGATCCAAACAGATAAGATACGCAAACGTGATGTTGTACTGAAATTCTCTGGGCTGGACTCTGGCAGCTACGCTAACACCTCAGTGCAAGTTAGACAAACACAGAATGATTTCCCAATTGGAACATGCATCAGTAGATCAAACATTGACAATGAGGACTTTGTTGACTTCATGGTGAAGCATTTTAACTGGGCTGTGTTTGGAAACGAGTTAAAGTGGTATTGGACAGAGCCACAACAAGGGAACTTCAATTACAAGGATGCTGATGATCTGTTAAGCCTGTGTCAGAAGCACAATATACAAACTCGTGGCCATTGTATCTTCTGGGAAGTGGATGGAGTGGTTCAGCAGTGGATCAAATCACTGAACCAAAACGATTTGATGACGGCGATCCAGAACCGCCTAAACGGGCTTCTAACTCGTTACAAGGGCAAGTTCAGTCACTATGATGTCAACAATGAAATGCTGCATGGTTCATTCTTTCAAGATAGGCTAGGCAAGGATATAAGGGCTAACATGTTCAAAACTGCAAACCAACTAGACCCTTCTGCTACACTCTTTGTGAATGATTACCATGTGGAGGATGGATGTGACACAAGATCATGTCCTGATAAGTACATCCATCACATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGAATTGGAATTCAAGGTCACATAGATAGTCCAATAGGGCCTATTGTGAGTTCTTCCCTTGACAAGTTGGGTATTCTTGGTCTCCCTATATGGTTCACTGAGCTTGATGTGTCTTCCATCAATGAATATGTGAGAGCAGATGATCTTGAAGTTATGCTGCGTGAAGCCATGGCTCATCCTGCAGTAGAAGGCATAATGCTGTGGGGTTTTTGGGAGCTGTTTATGAGTAGGGACAATGCACACTTGGTAAATGCAGAAGGTGACATCAATGAGGCAGGGAAAAGGTTCCTGGCTCTGAAACAAGAGTGGCTCTCTCACAGCCGTGGCCATGTTGATGAACAAGGCCAATACAACTTCAGAGGCTTTCATGGAACGTACAATGTGCAAGTTGTGACCCCATCAAAGAAAATTTCTAAGACATTTGTTCTTGACAAAGGTGACACGCCACTGGTGGTATCCGTTGATTTATAA 2706 0.4309 MAGNMSDPSGSKGANILLNHDFSRGLNSWHLNSCTGYVISAESGAQGGIPRELGANYAVITDRKECWQGLEQDITERISTGYTYTVLACVGVSNLSQGPSDVLATLKLEYHDSATSYLFIGRTSVNKDSWEKLEGKFSLSTMPDRVVFYLEGPAPGVDLLIRSVEINCSTPNNNITTTACVSAGDDNIIINPQFDDGLNNWSGRGCKIVLHDSMNDGKIVPKSGKFFASATERTQNWNGIQQDITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQAPDLKEQYIGIANLQATDKDWVTLQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLVLKHAAKTPPSTPPDVKNVTFGVNIIQNSNLADGTNGWFPLGNCTLSVKSGSPHIIPPMARDSLGPHELLSGRYILVTNRTQTWMGPAQIITDKVKLFSTYQVSAWVRIGSGSSGPQNVNVALGVDNQWVNGGQTEVSDDTWHEIGGSFRIEKQPSKVMVYVQGPAAGVDLMVAGLQIFPVDRHARFRYLKIQTDKIRKRDVVLKFSGLDSGSYANTSVQVRQTQNDFPIGTCISRSNIDNEDFVDFMVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLSLCQKHNIQTRGHCIFWEVDGVVQQWIKSLNQNDLMTAIQNRLNGLLTRYKGKFSHYDVNNEMLHGSFFQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDSPIGPIVSSSLDKLGILGLPIWFTELDVSSINEYVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNVQVVTPSKKISKTFVLDKGDTPLVVSVDL 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00453 901 Pfam Carbohydrate binding domain 14 155 IPR003305 GO:0016798
Viun8g00453 901 Pfam Carbohydrate binding domain 186 323 IPR003305 GO:0016798
Viun8g00453 901 Pfam Carbohydrate binding domain 358 500 IPR003305 GO:0016798
Viun8g00453 901 FunFam Glycosyl hydrolase family 10 protein 182 338 - -
Viun8g00453 901 SUPERFAMILY (Trans)glycosidases 549 852 IPR017853 -
Viun8g00453 901 SMART glyco_10 595 845 IPR001000 GO:0004553|GO:0005975
Viun8g00453 901 SUPERFAMILY Galactose-binding domain-like 356 516 IPR008979 -
Viun8g00453 901 SUPERFAMILY Galactose-binding domain-like 185 339 IPR008979 -
Viun8g00453 901 FunFam Endo-1,4-beta-xylanase A 550 852 - -
Viun8g00453 901 SUPERFAMILY Galactose-binding domain-like 13 168 IPR008979 -
Viun8g00453 901 PANTHER GLYCOSYL HYDROLASE 343 893 IPR044846 GO:0004553|GO:0005975
Viun8g00453 901 Pfam Glycosyl hydrolase family 10 558 815 IPR001000 GO:0004553|GO:0005975
Viun8g00453 901 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 549 844 IPR001000 GO:0004553|GO:0005975
Viun8g00453 901 Gene3D Glycosidases 547 857 - -
Viun8g00453 901 Gene3D - 9 168 - -
Viun8g00453 901 Gene3D - 356 513 - -
Viun8g00453 901 Gene3D - 180 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00453 Viun-Chr8 3332187 3337982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00453 4 901 Glycoside Hydrolase AT1G58370 68.847 0.0 1317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00453 - - gmx:100818319 1720.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00453 8 3332187 3337982 Viun8g00453 8 3332187 3337982 ECH
Viun8g00453 8 3332187 3337982 Viun9g03330 9 39954490 39963537 PCT