Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04100 ATGGCCTCTCACCCAAACCAACCAGGAACGGGAGCTGAAGGGCACCGAGAAAAGGACCCCCCTTCGCCGATCCCAGCAGCAGCCTCTCAGAATCCGCTTTCCGAGATATCGCCGTCGCCGTCGCCGTCCTCCTCGACGGCGCCGGCGCTGGTGCTGTCGAACTCGGGGAAGCGCATCGACCAGACGGGGAGGAAGAAGTACGTGAAGCAAGTGACGGGGCGGCACAACGACACGGAGCTGCACCTGGCGGCGCAGAGGGGCGACGTCGGCGCCGTGAGGCAGATCCTTCTCGACGTCGAATCTCAGGTTATGGGGACTCTCGGCGACGGCGATGACGACGATCTCGACACCGAGATTGCGGAGGTGCGAGCTTGCCTCGTCAACGAAGAGAACGAGCTCGGTGAGACCCCTTTGTTCACTGCCGCCGAAAAGGGTCATCTCCATGTCGTGAAGGAGCTTCTCAACCATTCCACTGCTCAGACTGTTTCCAAGAAGAACCGATCGGGATTTGATCCCTTGCATATTGCAGCTAGTAAAGGCCACCACTCCATTGTTCAGGTTTTGCTAGATTATGACCCGGGATTGAGCAAAACTATTGGTCCATCCAATTCGACTCCACTTATAACTGCGGCGACAAGAGGACACACGGAAGTGGTGAATGAGCTGCTGTCGAAAGATTGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAACGCTTTGCATTTAGCAGCTCGTCAGGGTCATGTGGAGATTGTGAAAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGAAGGACCGACAAGAAAGGCCAAACTGCATTGCACATGGCTGTAAAAGGGCAGAGTTGTGACGTGGTAAAATTACTTCTTGATGCAGATGCTGCCATTGTTATGCTTCCTGACAAATTTGGTAACACAGCATTACATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTATTGCATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCTCTTGACATTGCTGAAGGCCTTCCACTCTCCGAAGAGTCATCAGATATAAAAGAATGTCTTTCTCGATACGGAGCACTTAGAGCTAACGAGCTCAACCAGCCAAGGGATGAACTGAGGAAAACTGTTACTCAAATCAAGAAAGATGTTCACACTCAACTTGAACAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAAGAGTTAAGGAAACTCCATAGGGAAGGAATCAACAATGCCACAAACTCAGTAACAGTGGTGGCAGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACTGTGCCTGGCGGTGATAACAATGATGGCTCGGCGGTGGTAGCTGCTTATGCTGCTTTTAAAATCTTCTTCATCTTTAATGCTATTGCACTTTTCACATCTTTGGCGGTTGTGGTTGTTCAAATCACCCTGGTGAGAGGTGAAACAAAAGCAGAGAAAAGGGTGGTGGAGGTAATCAACAAGCTCATGTGGCTGGCTTCTGTTTGTACTTCAGTGGCATTTATTGCTTCTTCTTACATAGTTGTGGGAAGGAAGAATAAGTGGGCTGCTATACTTGTTACATTAGTTGGAGGGGTGATAATTTCTGGAGTTATTGGCACCATGACTTTCTATGTAGTGAGATCTAAGAGAAGCAGGTCAATGAGGAAGAAGGAGAAGCAGCTAGCCAGGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCCAACTCTGAGGGTGATCGGATTTATGCGATTTGA 1791 0.4852 MASHPNQPGTGAEGHREKDPPSPIPAAASQNPLSEISPSPSPSSSTAPALVLSNSGKRIDQTGRKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVESQVMGTLGDGDDDDLDTEIAEVRACLVNEENELGETPLFTAAEKGHLHVVKELLNHSTAQTVSKKNRSGFDPLHIAASKGHHSIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAEGLPLSEESSDIKECLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVAAYAAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRKNKWAAILVTLVGGVIISGVIGTMTFYVVRSKRSRSMRKKEKQLARRSGSNSWHHSEFSNSEGDRIYAI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04100 596 ProSiteProfiles Ankyrin repeat profile. 270 302 IPR002110 GO:0005515
Viun7g04100 596 SUPERFAMILY Ankyrin repeat 80 349 IPR036770 -
Viun7g04100 596 ProSiteProfiles Ankyrin repeat region circular profile. 270 297 - -
Viun7g04100 596 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 47 580 - -
Viun7g04100 596 FunFam Ankyrin repeat-containing protein ITN1 49 194 - -
Viun7g04100 596 Gene3D - 197 395 IPR036770 -
Viun7g04100 596 ProSiteProfiles Ankyrin repeat profile. 133 165 IPR002110 GO:0005515
Viun7g04100 596 Gene3D - 53 193 IPR036770 -
Viun7g04100 596 MobiDBLite consensus disorder prediction 28 58 - -
Viun7g04100 596 Pfam Ankyrin repeats (3 copies) 202 261 IPR002110 GO:0005515
Viun7g04100 596 Pfam Ankyrin repeats (3 copies) 268 333 IPR002110 GO:0005515
Viun7g04100 596 Pfam Ankyrin repeats (3 copies) 80 194 IPR002110 GO:0005515
Viun7g04100 596 ProSiteProfiles Ankyrin repeat region circular profile. 168 190 - -
Viun7g04100 596 FunFam Ankyrin repeat-containing protein ITN1 isoform A 195 394 - -
Viun7g04100 596 SMART ANK_2a 236 265 IPR002110 GO:0005515
Viun7g04100 596 SMART ANK_2a 75 104 IPR002110 GO:0005515
Viun7g04100 596 SMART ANK_2a 304 334 IPR002110 GO:0005515
Viun7g04100 596 SMART ANK_2a 202 231 IPR002110 GO:0005515
Viun7g04100 596 SMART ANK_2a 133 162 IPR002110 GO:0005515
Viun7g04100 596 SMART ANK_2a 270 299 IPR002110 GO:0005515
Viun7g04100 596 SMART ANK_2a 168 197 IPR002110 GO:0005515
Viun7g04100 596 MobiDBLite consensus disorder prediction 1 65 - -
Viun7g04100 596 Pfam Domain of unknown function 418 524 IPR026961 -
Viun7g04100 596 ProSiteProfiles Ankyrin repeat region circular profile. 133 157 - -
Viun7g04100 596 ProSiteProfiles Ankyrin repeat region circular profile. 236 259 - -
Viun7g04100 596 ProSiteProfiles Ankyrin repeat profile. 168 190 IPR002110 GO:0005515
Viun7g04100 596 ProSiteProfiles Ankyrin repeat profile. 236 268 IPR002110 GO:0005515
Viun7g04100 596 MobiDBLite consensus disorder prediction 565 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04100 Viun-Chr7 40085426 40088644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04100 24 596 Miscellaneous Gene Families AT3G12360 79.965 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04100 - - pvu:PHAVU_007G008900g 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02282 1 33683138 33686241 Viun7g04100 7 40085426 40088644 ECH
Viun7g04100 7 40085426 40088644 Viun7g04100 7 40085426 40088644 ECH