Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02282 ATGATGAAGAGACAATTGACAGGTATACGGGGTGATTCTCCCCTACAATCTGCAATCCGAGCTGGGAATTTAGAATTGGTTCGGGAAATCATCTCTCAGAGTCCCGAGGGTGAATTAAAGGAGCTTCTTTCAAAGAGAAACAACTCGTGTGAAACTGCTTTATATGTTGCAGCTGATAATGGTCATCTTGATATAGTGAAGGAATTGATTAGATACCATGATGTTGGGTTGGCTGGCTTCAAAGCTCGAAATGGATTCGATGCATTCCACATCGCTGCTAAGAATGGACACTTGGATATATTGAAGGTCCTCATGGAGTTTATTCCTGAAATTTCGATGACTGTTGATCTGACAAACACCACTGCGTTGCATACTGCTGCAGCACAAGGACACATTGAGGTAGTAAATTTTCTGTTGGAAAATGGTAGCAGCTTGGTAAGTATTGCGAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGTCATGTGGAGATAGTGAAGGCCATTCTGAACAAAGAACCTGAAATTGGTCTGAGAATGGATAAGAAGGGGCAGACAGCGCTGCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGAGCTTGTGAAATTGAATTCATCTATGGCTAATATGGTAGATGCCAAGGGAAACACTGCACTGCATATAGCAACCAGAAAGGGTCGTCTACAGGTTGTTCAGAAGCTACTAGATTGCAAAGAAACAGACACAGATGTTATCAACAAATCTGGAGAAACAGCCTTGGATACTGCAGAGAAAAATGGTCGGTTGGAAATCTCCAACTTTCTGCAACACAAGGGAGCTCAAAGTGCCAAGTCCATCAAGTCGCCTAATACAAACACAGCCCTTGAACTGAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACCTTCAAAACACAGAGACGCATGCGAGGTATAGCGAAGCGAATTAACAAAATGCACACTGAGGGACTCAACAATGCCATCAACTACAACACCATTGTTGCTGTCCTAATTGCAACGGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGCAACAAGATAAACTCTCTCCTGAGATGTCTCCTGGGGAAGCATACATTGCTCCTGATATTGGATTCAAGATATTCATAATCTTTGATTCTACTGCACTCTTCATATCACTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAACAAGTTGATGTGGGTGGCTTGTGTGCTAATTTCTGTGGCGTTTATTGCAATGTCATTCATAATTGTTGGAGATCATAAAGAGTTGGCCATAGCAGCCACTGCTCTAGGGACAGTGATTATGGCAGCAACTTTAGGAACACTCTGTTATTGGGTTATTGCTCACCGCGTTGAGGCCTCAAGATTAAGAAGTCTTCGAACAACAATGAGCAGTAGACAGTCATTGTCTTTGTCGATGATGTCTGGATCGGAGAATGAGTACAAGACAGTGTACGCTATATAA 1566 0.4253 MMKRQLTGIRGDSPLQSAIRAGNLELVREIISQSPEGELKELLSKRNNSCETALYVAADNGHLDIVKELIRYHDVGLAGFKARNGFDAFHIAAKNGHLDILKVLMEFIPEISMTVDLTNTTALHTAAAQGHIEVVNFLLENGSSLVSIAKSNGKTVLHSAARNGHVEIVKAILNKEPEIGLRMDKKGQTALHMAVKGQNLELVDELVKLNSSMANMVDAKGNTALHIATRKGRLQVVQKLLDCKETDTDVINKSGETALDTAEKNGRLEISNFLQHKGAQSAKSIKSPNTNTALELKRTVSDIKSGVHNQLEHTFKTQRRMRGIAKRINKMHTEGLNNAINYNTIVAVLIATVAFAAIFNVPGQYPEQQDKLSPEMSPGEAYIAPDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSFIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRVEASRLRSLRTTMSSRQSLSLSMMSGSENEYKTVYAI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02282 521 Gene3D - 180 280 IPR036770 -
Viun1g02282 521 Gene3D - 3 107 IPR036770 -
Viun1g02282 521 Gene3D - 108 179 IPR036770 -
Viun1g02282 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Viun1g02282 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Viun1g02282 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Viun1g02282 521 Pfam Ankyrin repeats (3 copies) 81 145 IPR002110 GO:0005515
Viun1g02282 521 Pfam Ankyrin repeats (3 copies) 10 74 IPR002110 GO:0005515
Viun1g02282 521 Pfam Ankyrin repeats (3 copies) 152 210 IPR002110 GO:0005515
Viun1g02282 521 Pfam Ankyrin repeats (3 copies) 218 280 IPR002110 GO:0005515
Viun1g02282 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Viun1g02282 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Viun1g02282 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Viun1g02282 521 SMART ANK_2a 118 147 IPR002110 GO:0005515
Viun1g02282 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Viun1g02282 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Viun1g02282 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Viun1g02282 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Viun1g02282 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Viun1g02282 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Viun1g02282 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Viun1g02282 521 Pfam Domain of unknown function 334 449 IPR026961 -
Viun1g02282 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Viun1g02282 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Viun1g02282 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 502 - -
Viun1g02282 521 ProSiteProfiles Ankyrin repeat profile. 84 106 IPR002110 GO:0005515
Viun1g02282 521 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Viun1g02282 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02282 Viun-Chr1 33683138 33686241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02282 2 521 Miscellaneous Gene Families AT1G07710 63.308 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02282 - - gmx:100787392 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02282 1 33683138 33686241 Viun7g04100 7 40085426 40088644 ECH
Viun1g02282 1 33683138 33686241 Viun1g02282 1 33683138 33686241 ECH