Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03302 ATGGGAAATTCGTTCGGGTGTTCGGCCTCCGGCGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGACTTGGTGGAGGCGAAGATGCTTTTGAACTGCAACCCCTGTCTCGCCAAGTATTCAACATTCGGTGGCCTCAATTCCCCTCTCCATTTTGCAGCAGCCAAAGGCCATAACGAGATTGTGGCATTGCTGCTGGAGAATGGAGCTGATGTGAATTCCAGAAATTATTGTGGCCAGACGGCCTTGATGCAAGCTTGTAGATATGGGCACTGGGAAGTTGTACAGACACTTCTACTCTTCAGATGCAATGTTATGAGGGCTGATTACCTTAGTGGGAGAACAGCTCTTCACTTTGCAGCTGTGCATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTCGTACCAAGTGCACCTTATCAAGCTATACATGCTTGCACAAATATTGACAAGGATGGTGGATCAAATGTTAAAGGAAAACATGAACATAGTGCCCTGTCCAAGTTTGTAAATAAGACTGCTGATGGTGGTATCACTGCCCTTCACATGGCTGCGTTAAATGGGTACTTTGATTGTGTACAGCTTCTGCTTGATCTTAACGCCACTGTGTCTGCTGTGACATTTCATTACGGAACATCTATGGATTTAATCGGGGCTGGAAGTACTCCTTTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGATCCTTGTTGCACGAGGTGCAAGTCGGATGGCTTTAAATTGCAATGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCACTGGCTTGAACAATTACTGGCACCCAGTTCTGATACCACAGTACCTACATTCTCTCATTCAAATTACTTGTCCTTGCCTCTCATGAGTGTGCTCAACATAGCTAGAGAGTATGGGTTACAATCATCTACAACCTCCTCTGATGAGATTGACATTTGTGCTGTATGTCTGGAGAGACCTTGTTCAGTGGCTGCTGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCGCTTTATCTTTGCTCAACAAACAATGTTTCTTCTGAAATGGTTGGCCCTCCGGGCTCTATCCCTTGCCCTCTCTGTAGACATGGAGTTGTCTCTTTTGTCAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAGTTACACATGTCCTTGGGCCTGTGTACCCCTTGCATGCTACATCCACGTGACCTAGATCAGCCATCCATCTCTCGTACACCTGACATTGGAAGAAATCGTGTAGCTTCTGTTCCATCAGAAATACTCTGCCCCGTCACTTGTAGTCCATTCCCATCTATGGCAATTCCCTTATGTACCTGCAACGATGGTCCATGTCCATCATTTGAACCCCGAGAAGTAGAAACACGAGATGAATCACCTAATCACTCTCAAGCATCAACAATGGATCAGGATAAAATTGAAGGGCCAAGATTGGATAAAACAACTTGCTCTAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAGATAAATGCTTGA 1539 0.4607 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSAPYQAIHACTNIDKDGGSNVKGKHEHSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNATVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILVARGASRMALNCNGWLPLDIARMWGRHWLEQLLAPSSDTTVPTFSHSNYLSLPLMSVLNIAREYGLQSSTTSSDEIDICAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMVGPPGSIPCPLCRHGVVSFVKLPGSQAKENKLHMSLGLCTPCMLHPRDLDQPSISRTPDIGRNRVASVPSEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPREVETRDESPNHSQASTMDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03302 512 Gene3D - 8 140 IPR036770 -
Viun7g03302 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Viun7g03302 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Viun7g03302 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Viun7g03302 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Viun7g03302 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Viun7g03302 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Viun7g03302 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Viun7g03302 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Viun7g03302 512 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 12 274 - -
Viun7g03302 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Viun7g03302 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Viun7g03302 512 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Viun7g03302 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Viun7g03302 512 SUPERFAMILY RING/U-box 318 375 - -
Viun7g03302 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Viun7g03302 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Viun7g03302 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Viun7g03302 512 Gene3D - 141 301 IPR036770 -
Viun7g03302 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Viun7g03302 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Viun7g03302 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Viun7g03302 512 MobiDBLite consensus disorder prediction 458 484 - -
Viun7g03302 512 Pfam Ankyrin repeats (many copies) 169 198 IPR002110 GO:0005515
Viun7g03302 512 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Viun7g03302 512 Pfam Ankyrin repeats (3 copies) 212 274 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03302 Viun-Chr7 35038525 35043883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03302 14 280 Miscellaneous Gene Families AT2G31820 27.407 4.83e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03302 K19044 - gmx:100785638 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03302 7 35038525 35043883 Viun7g03302 7 35038525 35043883 ECH
Viun4g02250 4 38186580 38192574 Viun7g03302 7 35038525 35043883 PCT