Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02250 ATGGGGAATTCATTTGGGTGCTCGGCGTCCGGCGAGAGGTTGGTGTCGGCGGCGAGGGACGGCGATTTGGTTGAGGCGAAGATGCTTCTGGAATGCAACCCTGGTCTTGCAAAGTACTCCACTTTTGGGGGTCTCAATTCGCCTCTTCATTTTGCAGCTTCTAAAGGCCATAACGAGATTGTGGCATTGTTGCTTGAAAATGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGACGGCATTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAAACTCTTCTGCTCTTCAGATGTAATGTTATGAAAGCAGATTATCTCAGTGGGAGGACAGCTCTACACTTTGCAGCCATCAATGGACATGCAAGATGCATCAGACTTGTTGTTGCAGATTTTGTTCCAAGTGCTCCTTTTGAATCTTTACATGCTCGCATGGATGTGGAAGGTGATGGATCAAATGTGAAAAACACACATGAACAAAGTGTGCTGTCGAGGTTTGTAAATAAAACAGCTGATGCTGGTATCACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTGATGCTAATGTGTCAGCTGCAACATTTCATTATGGAACTTCAATGGATTTAATTGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGCCAGATCCTCCTTGCAAGAGGTGCCAGTCGAATGGCTTTGAATTGCAATGGATGGCTTCCACTTGATGTTGCTAGGATGTGGGGACGTCATTGGCTAGAACCATTGCTGGCACCCACTTCTCAAGCCACAATATCGACGTTTCCTTCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTGCTCAACATTGCCAGAGACTGTGGATTGCAATCAACTGCAACCTCCTCCAGTGAAGTTGATGTTTGTGCTGTCTGCCTTGAGAGGTCATGTTCTGTGGCTGCTGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTTTATCTTTGCTCAACGAGCAATGTTTCTTCTGAAACGTGTGTTCCTCCTGGCTCTATCCCTTGCCCTCTTTGCAGACATGGAATTGTCTCCTTCGTGAAGTTACCAGGTTCCCAAGCAAAAGAAAACAAAATGCACGTGTCTCTCAGCCTCTGTACCCCATGCATGCTACACCCACGTGACCTAGATCACTCATCATCTCTTTCTCATACCCCTGAGATTCGAAGGAACCGCGTAGCTTCAGTTCCATCAGAGATGCTTTGCCCTGTCACTTGTACTCCATTTCCTTCTGTAGCTATTCCTCTCTGCACTTGCAATGATGGTCCTTGCCCTACATTTGAATCGCACGAAGCAGCCGATGAACCGGTTCGTCGGTCACAAGCATCGTCGACGATGGATCAGGAGAAAATGGAAGGTCCAAGGCTTGATAAAACAACATGTTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1536 0.4583 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFESLHARMDVEGDGSNVKNTHEQSVLSRFVNKTADAGITALHMAALNGYFDCVQLLLDLDANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLAPTSQATISTFPSSNYLSLPLMSVLNIARDCGLQSTATSSSEVDVCAVCLERSCSVAAEGCGHELCVRCALYLCSTSNVSSETCVPPGSIPCPLCRHGIVSFVKLPGSQAKENKMHVSLSLCTPCMLHPRDLDHSSSLSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPTFESHEAADEPVRRSQASSTMDQEKMEGPRLDKTTCSGMFWGRRSCSREHQCNSEINA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02250 511 PANTHER ANKYRIN DOMAIN-CONTAINING 111 262 - -
Viun4g02250 511 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Viun4g02250 511 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Viun4g02250 511 SMART ANK_2a 176 205 IPR002110 GO:0005515
Viun4g02250 511 SMART ANK_2a 44 73 IPR002110 GO:0005515
Viun4g02250 511 SMART ANK_2a 77 106 IPR002110 GO:0005515
Viun4g02250 511 SMART ANK_2a 219 248 IPR002110 GO:0005515
Viun4g02250 511 SMART ANK_2a 111 142 IPR002110 GO:0005515
Viun4g02250 511 SUPERFAMILY Ankyrin repeat 14 272 IPR036770 -
Viun4g02250 511 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Viun4g02250 511 Pfam Ankyrin repeats (many copies) 170 216 IPR002110 GO:0005515
Viun4g02250 511 Pfam Ankyrin repeats (many copies) 219 260 IPR002110 GO:0005515
Viun4g02250 511 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Viun4g02250 511 Gene3D - 6 139 IPR036770 -
Viun4g02250 511 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Viun4g02250 511 ProSiteProfiles Zinc finger RING-type profile. 318 368 IPR001841 -
Viun4g02250 511 MobiDBLite consensus disorder prediction 458 483 - -
Viun4g02250 511 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Viun4g02250 511 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Viun4g02250 511 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Viun4g02250 511 ProSitePatterns Zinc finger RING-type signature. 333 342 IPR017907 -
Viun4g02250 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 389 IPR013083 -
Viun4g02250 511 ProSiteProfiles Ankyrin repeat region circular profile. 219 245 - -
Viun4g02250 511 SUPERFAMILY RING/U-box 317 374 - -
Viun4g02250 511 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Viun4g02250 511 Gene3D - 150 269 IPR036770 -
Viun4g02250 511 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02250 Viun-Chr4 38186580 38192574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02250 17 272 Miscellaneous Gene Families AT5G02620 27.273 6.54e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02250 K19044 - gmx:100812809 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02250 4 38186580 38192574 Viun4g02250 4 38186580 38192574 ECH
Viun4g02250 4 38186580 38192574 Viun7g03302 7 35038525 35043883 PCT