Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03234 ATGTGGCCATTCAGCAGGAAAGGGGCTTCTGGGTTTTCATCATCTTCCACTGCAGAGCAAGTCACTGAAGGTCTTGATGGAACTGGTCTCACTGCCATTGTTACAGGAGCATCCAGTGGTATTGGCACTGAGACTACACGTGTACTTGCTTTGCGAGGTGTCCATGTGATTATGGGTGTGAGAAATATGATTGCTGCTAAAGATGTCAAAGAAACAATACTTAAGGAGATTCCCTCTGCAAAAGTTGATGCCATGGAATTAGATCTCAGTTCAATGGATTCTGTCAATAAATTTGCATCAGATTTTAAGTCTTCTGGTCTTCCGTTGAACATCTTGGTAAACAACGCAGGAATTATGGCGTGCCCTTTCAAGCTATCTGCAGACAAAATTGAACTACAGTTCGCCACAAATCACTTAGGTCACTTTCTATTGACAAATCTTTTGTTGGACACTATGAAGAAAACTTCACGTGAAACTAAGAAAGAAGGAAGAATTGTTAATGTCTCTTCTGAGGCACACAAGTTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGATGAGTCAAGTTACAGCAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCCAATGAACTTTCAAGACGTCTCAAGGAAGATGGGGTGGAGATTTCTGCAAATTCTCTTCATCCTGGAGCAATTACCACCAATCTTTTTCGTCATACTGGAATAAACGGTATAGTTAATGGTATTGGTAGACTCGTGTTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGCAAGTATTTTTCAGACAGTAATGTGGCCCGAACAACCTCACTGGGGACTGACGCTGATTTGGCCAAGAAACTTTGGGATTTCAGCTTGAATTTGACCAAGTAA 939 0.4153 MWPFSRKGASGFSSSSTAEQVTEGLDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMIAAKDVKETILKEIPSAKVDAMELDLSSMDSVNKFASDFKSSGLPLNILVNNAGIMACPFKLSADKIELQFATNHLGHFLLTNLLLDTMKKTSRETKKEGRIVNVSSEAHKFAYSEGIRFDKINDESSYSNWRAYGQSKLANILHANELSRRLKEDGVEISANSLHPGAITTNLFRHTGINGIVNGIGRLVFKNVQQGAATTCYVALHPQVKGISGKYFSDSNVARTTSLGTDADLAKKLWDFSLNLTK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03234 312 CDD retinol-DH_like_SDR_c_like 29 304 - -
Viun7g03234 312 Pfam short chain dehydrogenase 31 178 IPR002347 -
Viun7g03234 312 PANTHER RETINOL DEHYDROGENASE 10 311 - -
Viun7g03234 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Viun7g03234 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Viun7g03234 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Viun7g03234 312 Gene3D - 22 312 - -
Viun7g03234 312 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Viun7g03234 312 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Viun7g03234 312 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Viun7g03234 312 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Viun7g03234 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03234 Viun-Chr7 34600672 34605011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03234 31 170 Acyl Lipid Metabolism Gene Families AT1G62610 30.872 3.85e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03234 - - gmx:100784001 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03234 7 34600672 34605011 Viun7g03234 7 34600672 34605011 ECH
Viun4g02138 4 36884264 36893376 Viun7g03234 7 34600672 34605011 PCT