Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02138 ATGTGGGCATTCATTAGAAAAGGAGATTCTGGGTTTTCATCATCTTCCACTGCAGAAGAAGTTACTCTTGGAATCCATTCTACTTCTCTCACTGCAATTGTCACAGGTGCATCAAGTGGTATAGGTGCAGAGACAGCTCGTGTTCTTGCATTGCGTGGTGTTCATGTGATTATGGGAGTGATTGAAATGATTGATGCATATAATGTGAAGGAATCGATTCTTAAGCAAATTCCCACTGCTAAAGTTGATGTGATGAAGTTAGACCTAAGTTCCATGGCCTCTGTTCATCATTTTGCAGATGAGTTTAATTCAACTTCTCTTCCATTGAATATTTTGATAAACAATGCAGGGATTTTTGCATCCCCTTTCATGCTATCCAAGGATAACATTGAACTTCAATTTGCTATAAATTATTTAGGTCATTTTCTTCTGACAAGTCTGTTGTTGGATAATATGAAGAAAACCGCAAGAGAAAGTAAGATACAAGGAAGAATTGTTAATGTCTCCTCCATGGGTCATAGGTTTACTTATCCTAAAGGAATCCTTTTTGACAAACTTAATGATCCATCAAGTTACAACAAGTGGCGTGCATATGGACAATCAAAGCTTTCTAACATTTTACATGCCAATGAACTTGCAAGACGTTTCAAGGAAGATGGAGTAGATATTACTGCGAATTCTCTTCATCCAGGATTTATTACCACAAATATATATCTTCACAATCGATTGCTGACAGGTATAAAGAATATTCTAGGTCCATTTGTAATTCGTTGCCTAGAGCGATTTGTGTTGAAAAATGTGCAGCAAGGAGCATCAACAACATGCTATTTAGCATTGCACCCACAAGTGAGTGGAATCAGTGGCAAGTATTTTGCAGATAATAATGTTTCAGAAACATCCTTGGATGGAAGGGACATGGATTTGGCTAAGAAGCTATGGGATTTTAGCATGAATTTAACTAACCAAAAATGA 972 0.3704 MWAFIRKGDSGFSSSSTAEEVTLGIHSTSLTAIVTGASSGIGAETARVLALRGVHVIMGVIEMIDAYNVKESILKQIPTAKVDVMKLDLSSMASVHHFADEFNSTSLPLNILINNAGIFASPFMLSKDNIELQFAINYLGHFLLTSLLLDNMKKTARESKIQGRIVNVSSMGHRFTYPKGILFDKLNDPSSYNKWRAYGQSKLSNILHANELARRFKEDGVDITANSLHPGFITTNIYLHNRLLTGIKNILGPFVIRCLERFVLKNVQQGASTTCYLALHPQVSGISGKYFADNNVSETSLDGRDMDLAKKLWDFSMNLTNQK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02138 323 Gene3D - 27 323 - -
Viun4g02138 323 PANTHER RETINOL DEHYDROGENASE 10 320 - -
Viun4g02138 323 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Viun4g02138 323 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Viun4g02138 323 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Viun4g02138 323 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Viun4g02138 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Viun4g02138 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Viun4g02138 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Viun4g02138 323 CDD retinol-DH_like_SDR_c_like 31 313 - -
Viun4g02138 323 Pfam short chain dehydrogenase 31 178 IPR002347 -
Viun4g02138 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 297 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02138 Viun-Chr4 36884264 36893376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02138 33 297 Acyl Lipid Metabolism Gene Families AT3G55290 27.957 3.56e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02138 - - gmx:100776100 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02138 4 36884264 36893376 Viun7g03234 7 34600672 34605011 PCT