Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03098 ATGACTGAACCTTCCAAGGTCGTTCACGTTCGAAACGTTGGGCACGAAATATCCGAAAATGATTTACTCCAACTGTTTCAGCCTTTTGGTGTCATAACTAAGCTTGTTATGTTGCGTGCAAAAAATCAGGCTCTTCTCCAAATGCAAGATGTTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATATCCAGCCAAGTATAAGGGGGAGGAATGTTTATGTTCAGTTTTCCTCACATCAAGAACTGACAACAATGGATCAAAGTCAAGGACGAGGAGATGAGTCATGCTGTCATGCTGTCGGGAACTCTCTGGATGCACAGCCAAACCGAATTCTCTTAGTTACAATTCATCACATGCTGTATCCTATAACAGTGGATGTGCTGTTTCAAGTATTTTCACCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTTTCAATCACGTCAGAGTGCTGTTAATGCAAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGAAGAATTACAAGTGAACTACAATAATGACCGTTCAAGAGACTTCACAAACCCAAATCTTCCAACAGAGCAGAAAGGCAGACCTTCACAACAGCCTGGATATGGTGATGCAGGAAATATGTATGCTGCTCAAGGTTCTGGAGGCAGGGCAGTTGGATTTCCACAGATGGCAAATGCTGCAGCCATTGCAACTGCCTTCGGGGGAGGTTTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTGCTTGTATCAAATCTTAATTCTGATAGAATTGATGAGGATAAGCTATTCAACTTGTTCTCTATTTATGGGAATATTGTGAGAATTAAACTTCTCCGAAATAAACCAGATCATGCTCTTATCCAGATGGGTGATGGTTTTCAAGCTGAATTGGCTGTACACTTTCTGAAGGGAGCCGTGTTGTTTGAGAAACAGTTAGAGGTGAACTTCTCCAAGCATGCACACATAACCCAAGGTGCTGACACACGTGAATACATCAGTTCAAATCTCAACCGTTTCAACCGCAACGCAGCCAAAAACTACCGTTATTGCTGCTCTCCAACAAAGATTATCCATTTGTCCACACTCCCACAAGACATCACTGAGGAGGAGATTGTGAGCCTTGTAGAGGAGCATGGAACCGTTGTGAACAGCAAAGTCTTTGAGATGAGTGGGAAAAAACAGGCTCTGGTTCAGTTTGAGAACGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGAATGCCAGCACACTTTCTGGCTCAGTTGTCCGTATCTCCTTTTCGCAGTTACAGAATATATGA 1374 0.4316 MTEPSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVNALQFYANIQPSIRGRNVYVQFSSHQELTTMDQSQGRGDESCCHAVGNSLDAQPNRILLVTIHHMLYPITVDVLFQVFSPHGSVEKIVTFQKSAGFQALIQFQSRQSAVNARSTLQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDFTNPNLPTEQKGRPSQQPGYGDAGNMYAAQGSGGRAVGFPQMANAAAIATAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAVLFEKQLEVNFSKHAHITQGADTREYISSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDITEEEIVSLVEEHGTVVNSKVFEMSGKKQALVQFENEEQATEALVCKNASTLSGSVVRISFSQLQNI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03098 457 Gene3D - 1 101 IPR012677 -
Viun7g03098 457 Gene3D - 363 457 IPR012677 -
Viun7g03098 457 Pfam RRM-like domain 105 187 IPR021790 -
Viun7g03098 457 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 435 - -
Viun7g03098 457 MobiDBLite consensus disorder prediction 199 228 - -
Viun7g03098 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 349 - -
Viun7g03098 457 CDD RRM1_PTBPH3 6 80 IPR034795 -
Viun7g03098 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Viun7g03098 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 385 447 IPR000504 GO:0003723
Viun7g03098 457 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 4 453 IPR006536 GO:0003723|GO:0005634|GO:0006397
Viun7g03098 457 CDD RRM4_PTBPH3 373 451 - -
Viun7g03098 457 SUPERFAMILY RNA-binding domain, RBD 111 210 IPR035979 GO:0003676
Viun7g03098 457 Gene3D - 264 360 IPR012677 -
Viun7g03098 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 380 454 IPR000504 GO:0003723
Viun7g03098 457 CDD RRM3_PTBPH3 269 344 IPR034797 -
Viun7g03098 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Viun7g03098 457 SMART rrm1_1 381 450 IPR000504 GO:0003723
Viun7g03098 457 SMART rrm1_1 7 76 IPR000504 GO:0003723
Viun7g03098 457 SMART rrm1_1 271 340 IPR000504 GO:0003723
Viun7g03098 457 SMART rrm1_1 114 183 IPR000504 GO:0003723
Viun7g03098 457 SUPERFAMILY RNA-binding domain, RBD 268 453 IPR035979 GO:0003676
Viun7g03098 457 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Viun7g03098 457 Gene3D - 110 214 IPR012677 -
Viun7g03098 457 MobiDBLite consensus disorder prediction 199 218 - -
Viun7g03098 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 344 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03098 Viun-Chr7 33606549 33615465 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03098 K14948 - gmx:100819672 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g01819 4 32390488 32397210 Viun7g03098 7 33606549 33615465 PCT