Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01819 ATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGACATGAGATATCTGAAAATGATTTGCTTCAGCTATTTCAGCCTTTTGGAGTTATAACAAAGCTTGTTATGTTGCGTGCAAAAAATCAGGCACTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAGTTTTATTCAAATGTTCAGCCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACTACAATGGATCAAAATCAAGCACGAGAGGATGAGCCAAATCGAATTCTCTTAGTTACAGTTCATCACATGCTGTATCCTATAACAGCGGATGTGCTACATCAAGTGTTTTCTCCCCATGGATTTGTGGAAAAGATTGTAACCTTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCCCGTCAAAGTGCTGTTGCTGCCAGAAGTACACTACAGGGACGCAATATCTATGATGGTTGTTGTCAGTTGGACATTCAATACTCAAACCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGGGACTTCACGAACCCAAATCTGCCTACTGAACAGAAAGGTCGATCTTCACAACCTGGATATGGTGATGCAGGAGGCATGTATTCTGGAGCAAGGACAGCTGGATTCTCACAGATGGCCAATGCTGCTGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACGATTCTTGTTGCGAATCTCAGTCCTGATAGAATAGACGAAGATAAACTATTCAATTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTACTCCGAAATAAGCCTGACCATGCACTTATCCAGATGGGGGATGGTTTCCAGGCTGAATTAGCAGTACATTTTCTGAAGGGAGCCATGTTGTTTGGGAAGCGATTGGAAGTCAACTATTCAAAGTATGCAAACATATCCCAAGGTGCTGATACACACGAGTATGTCAATTCAAATCTCAATCGATTCAACCGAAATGCTGCAAAGAACTATCGGTATTGCTGCTCCCCGACAAAAATGATCCACTTGTCCACCCTCCCACAAGACATAACTGAAGATGAGATTGTAAGCCTTTTGGAGGAACATGGTAACATTGTCAACTGCAAAGTGTTTGAGATGAATGCTAAAAAACAGGCACTTGTTCAATTTGACACTGAGGAACAGGCTACTGAAGCCCTTGTGTGCAAACATGCAAGTCCACTTTCTGGATCGGTTGTCCGTATCTCCTTTTCCCAGTTGCAGAATATCTGA 1320 0.4205 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQFYSNVQPSIRGRNVYVQFSSHQELTTMDQNQAREDEPNRILLVTVHHMLYPITADVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYDGCCQLDIQYSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAGGMYSGARTAGFSQMANAAAIAAAFGGGLPPGITGTNERCTILVANLSPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKYANISQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEDEIVSLLEEHGNIVNCKVFEMNAKKQALVQFDTEEQATEALVCKHASPLSGSVVRISFSQLQNI 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01819 439 CDD RRM3_PTBPH3 251 326 IPR034797 -
Viun4g01819 439 MobiDBLite consensus disorder prediction 186 205 - -
Viun4g01819 439 MobiDBLite consensus disorder prediction 186 212 - -
Viun4g01819 439 CDD RRM2_PTBPH3 96 183 IPR034796 -
Viun4g01819 439 CDD RRM1_PTBPH3 6 80 IPR034795 -
Viun4g01819 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 428 IPR000504 GO:0003723
Viun4g01819 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Viun4g01819 439 Pfam RRM-like domain 97 174 IPR021790 -
Viun4g01819 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Viun4g01819 439 Gene3D - 98 201 IPR012677 -
Viun4g01819 439 Gene3D - 1 97 IPR012677 -
Viun4g01819 439 Gene3D - 345 439 IPR012677 -
Viun4g01819 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Viun4g01819 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 436 IPR000504 GO:0003723
Viun4g01819 439 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 417 - -
Viun4g01819 439 SUPERFAMILY RNA-binding domain, RBD 250 435 IPR035979 GO:0003676
Viun4g01819 439 SMART rrm1_1 253 322 IPR000504 GO:0003723
Viun4g01819 439 SMART rrm1_1 363 432 IPR000504 GO:0003723
Viun4g01819 439 SMART rrm1_1 101 170 IPR000504 GO:0003723
Viun4g01819 439 SMART rrm1_1 7 76 IPR000504 GO:0003723
Viun4g01819 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 337 - -
Viun4g01819 439 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Viun4g01819 439 CDD RRM4_PTBPH3 355 433 - -
Viun4g01819 439 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Viun4g01819 439 Gene3D - 249 344 IPR012677 -
Viun4g01819 439 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 4 435 IPR006536 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01819 Viun-Chr4 32390488 32397210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01819 K14948 - gmx:100798234 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g01819 4 32390488 32397210 Viun4g01819 4 32390488 32397210 ECH
Viun4g01819 4 32390488 32397210 Viun7g03098 7 33606549 33615465 PCT