Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02412 ATGCGATTAATAAGAGGAACGATACGGAAGCTGTGTTTCTTATCCTATTGTCTTCAACCGGGCGAATCTCCGTTAATCTTAATCCCAACCGAAGCAAGAAGCTTCTCTATGTCTCGAATCTTCTCTGCATGGAACAAGAAGAAGCTGCACCTCAGTTTCTTGCCCAGTTTTTTCTCTTCTAGGCACAGCACCAGTACTGGGCTTTTACGGCCCAGGATTCTCAGACTGTACAGTAGCAGCAATGGGGAGCCGCCACAGGATTGGCATCACGACGCTGCCGTGCCTCCGCAAACTCCTTTCAGTGTTAATTATGTTCGGGCCCCCGCTGGGCCCCGCCAAGAGAACACTGGGTGGGTCGGAGGCTCTAATTTGGGTAGGGATTTTCCGACTCCCAAGGAAATCTGCAAGGGTCTCGATAAATTTGTTATTGGGCAACACAGAGCCAAGAAGGTGCTCTCTGTAGCAGTTTATAATCACTACAAGAGAATATTCAACGGGTCAGGGGAAGATGCAGGAATCTCCGAAGGATTGGATGATGACGATAATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGTTCAGGGAAGACATTACTTGCGAAAACACTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCAACTACACTAACGCAGGCTGGTTATGTTGGAGAAGACGTTGAGTCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCAAGCAGCCCAACAGGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAAAGCTTGAATATTAGCCGAGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAACGTCCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACAAAGAACATTCTCTTCATATGTGGTGGAGCATTTATTGATCTCGAAAAAACCATTTCCGAGAGACGGCAAGATTCTTCAATTGGTTTTGGGGCACCGATCCGTGCTAATATGAGAACTGGTGGGGTTACACATGCTGCAGTAACATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTTCATATGGTCTCATCCCAGAGTTTATAGGACGATTTCCAATCTTAGTTAGCTTATCAGCTCTAACTGAAGACCAACTTATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTGACATGAATGATGTAAAGCTACACTTCACAGAGAAAGCTCTTAGATTGATTGCAAAGAAAGCAATGACCAAAAATACTGGAGCCAGGGGTTTAAGAGCCCTACTGGAAATCATTTTAACGGAAGCTATGTTTGAGATTCCAGATGTTAAAGCTGGAAATGAAATGATTGATGCGGTTGTTGTTGACGAGGAGTCGGTAGGATCGGTAAATTCCATTGGCTGTGGAGGAAAAATTCTTTGTGGAGATGGTGCTTTAGATCAGTACCTAGCTACGATGGAGAGTTCAGTGGTTAATCATGACGTAGCGGAACCAGACTTACAAGAGGGGGAATCAGAGATTTCATCAAGAGCTATGAGCATGTAA 1626 0.4422 MRLIRGTIRKLCFLSYCLQPGESPLILIPTEARSFSMSRIFSAWNKKKLHLSFLPSFFSSRHSTSTGLLRPRILRLYSSSNGEPPQDWHHDAAVPPQTPFSVNYVRAPAGPRQENTGWVGGSNLGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYKRIFNGSGEDAGISEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPIRANMRTGGVTHAAVTSSLLESVESADLISYGLIPEFIGRFPILVSLSALTEDQLMQVLTEPKNALAKQYKKLFDMNDVKLHFTEKALRLIAKKAMTKNTGARGLRALLEIILTEAMFEIPDVKAGNEMIDAVVVDEESVGSVNSIGCGGKILCGDGALDQYLATMESSVVNHDVAEPDLQEGESEISSRAMSM 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02412 541 Pfam C-terminal, D2-small domain, of ClpB protein 397 466 IPR019489 -
Viun7g02412 541 SMART ClpB_D2_small_2 397 490 IPR019489 -
Viun7g02412 541 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 396 498 - -
Viun7g02412 541 CDD RecA-like_ClpX 129 394 - -
Viun7g02412 541 Pfam AAA domain (Cdc48 subfamily) 186 390 IPR003959 GO:0005524|GO:0016887
Viun7g02412 541 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 122 395 - -
Viun7g02412 541 SMART AAA_5 186 344 IPR003593 GO:0016887
Viun7g02412 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 483 IPR027417 -
Viun7g02412 541 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 92 514 - -
Viun7g02412 541 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 126 487 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Viun7g02412 541 Gene3D - 396 494 - -
Viun7g02412 541 Gene3D - 123 395 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02412 Viun-Chr7 28181986 28188304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02412 190 289 Miscellaneous Gene Families AT3G02450 36.634 1.63e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02412 K03544 - gmx:100818418 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02389 4 39268513 39277627 Viun7g02412 7 28181986 28188304 PCT