Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02389 ATGTCGCGACTCTTTGGTAGATGGAAGAAGGCGAAGGAAATGGCGTCGCTTTCGGGGTTTCTGCCACGTGGGCACCAGCGAATCGGGTTAAATTTTTGCCCAATTTCGACCCAGCTGAATATGATATCCGGCCACCGGCGGTGGGAGGCTCAGGTGGGGGTTCAGGAGCGGTATAAGTGGGACCGTGGCGGGTCGGACGACAACCCGACCCGGAAGATCCGGGCTGAGGCTAATTGCCCACGTTGCACTAAGGACATGAACCTTGTTTTCTCTAATCGCCATTTTCCCACCCCACAAAGTGAGTCTAATTCTGAGTTGGGTGGCGAGGGAGAGAGAGAAAAGGGTTACCAAGCGGTTAACCTTTGCCCGAGTTGCAAAACTGCTTATTACTTTCGCCCTTATGACACTACACCTTTGCAAGGTACTTTCGTGGAGATTGGTAGGGTCAGTAGCACTAACAATAATGGTCTTAATAATGTAAGTGGTAAGGGACATTCTCCTAGGAGGATTACACATGGGAAAGGTGGTGGCAAAGAAGGTAGTAGTAGTAGTACTAGTAGGGGTATTCATGGAGGAGAGGAATCTGGCCCGAAGAGTAATAATAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGTCATACAATGGTGGTGGTGGTGGCGGTAATGGTAGTAGTGGGGAGCCACCTGAGTCGTGGCCTGGTGTTAATGGGAATGAGAATGGGTTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGGATTAATGTTATCCGGGCTACGGGCCCCCGGAATGGTGGTTCAGGTGGTGGTGGTGGTGGTGGTGGAGGCGATGGTGAGAAGACTTCCTGGGGAGGATCCAATTTGGGGAAGGATTTGCCCTCACCGAAGGAGATATGTAAGGGTCTTGACAAGTTTGTTATTGGCCAAGAGAGAGCCAAGAAGGTACTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAACTGTAGATTCAGAAGTATTAGATGATGACGATAATGTGGATCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGTTCAGGGAAGACATTACTTGCCAAAACACTGGCTCGATTTGTGAATGTGCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATACTGTACAAACTACTAGCGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCTGAGAGCTTAAATATCAGCAGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCCAGGAAGCATCCAAGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAAAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAACTGGTGGAATCACAGATTCTGTAGTAACATCATCTTTACTTGAGTCAGTAGAAAGTGCTGATCTTATTGCATTTGGCCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCAGCTTGTCAGCTTTAACTGAAGACCAACTTATGATGGTCCTCACTGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTAGCATGAATAATGTCAAGTTACACTTTACAGAGAAAGCTCTAAGGCTGGTAGCAAAGAAAGCAATGTCTAAAAATACTGGTGCTAGAGGTTTAAGAGCCCTACTGGAAAGCATTTTAACTGAGGCGATGTTTGAGATTCCTGATATTAAGACAGGAAGTGATCGAATTGATGCAGTTGTTGTTGATGAAGAGTCAGTAGGATCACTAACTTCCCTTGGTTGTGGAGGGAAAATTCTCCGGGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATGAAAGATTCAGCGGTTAATGTTGACGTGGGCGAATCAGACTTAAATGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGTTTGTAA 2142 0.4472 MSRLFGRWKKAKEMASLSGFLPRGHQRIGLNFCPISTQLNMISGHRRWEAQVGVQERYKWDRGGSDDNPTRKIRAEANCPRCTKDMNLVFSNRHFPTPQSESNSELGGEGEREKGYQAVNLCPSCKTAYYFRPYDTTPLQGTFVEIGRVSSTNNNGLNNVSGKGHSPRRITHGKGGGKEGSSSSTSRGIHGGEESGPKSNNNASKWLEVSLWETLMSYNGGGGGGNGSSGEPPESWPGVNGNENGLAVHTPPGPPFAPGINVIRATGPRNGGSGGGGGGGGGDGEKTSWGGSNLGKDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHATLQKGSTVDSEVLDDDDNVDLEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGITDSVVTSSLLESVESADLIAFGLIPEFIGRFPILVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLVAKKAMSKNTGARGLRALLESILTEAMFEIPDIKTGSDRIDAVVVDEESVGSLTSLGCGGKILRGDGALEQYLAKMKDSAVNVDVGESDLNEGDLELSSRAMSL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02389 713 MobiDBLite consensus disorder prediction 218 298 - -
Viun4g02389 713 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 568 670 - -
Viun4g02389 713 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 74 686 - -
Viun4g02389 713 Gene3D - 568 666 - -
Viun4g02389 713 Pfam AAA domain (Cdc48 subfamily) 358 562 IPR003959 GO:0005524|GO:0016887
Viun4g02389 713 MobiDBLite consensus disorder prediction 151 203 - -
Viun4g02389 713 MobiDBLite consensus disorder prediction 177 203 - -
Viun4g02389 713 SMART ClpB_D2_small_2 569 662 IPR019489 -
Viun4g02389 713 Gene3D - 292 567 IPR027417 -
Viun4g02389 713 MobiDBLite consensus disorder prediction 91 112 - -
Viun4g02389 713 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 295 659 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Viun4g02389 713 MobiDBLite consensus disorder prediction 91 105 - -
Viun4g02389 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 654 IPR027417 -
Viun4g02389 713 CDD RecA-like_ClpX 299 566 - -
Viun4g02389 713 MobiDBLite consensus disorder prediction 151 165 - -
Viun4g02389 713 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 292 567 - -
Viun4g02389 713 Pfam C-terminal, D2-small domain, of ClpB protein 569 638 IPR019489 -
Viun4g02389 713 SMART AAA_5 358 566 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02389 Viun-Chr4 39268513 39277627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02389 362 461 Miscellaneous Gene Families AT3G02450 37.624 6.89e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02389 K03544 - gmx:100805340 1187.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02389 4 39268513 39277627 Viun4g02389 4 39268513 39277627 ECH
Viun4g02389 4 39268513 39277627 Viun7g02412 7 28181986 28188304 PCT