Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01939 ATGCAGAAGTTAAAGGGAAAAAGATTCTCTTTGAAGATGGGGAACACGTATTTGTTGTTCACCTTTTGTTTGTGGGCTTTGACATGCTCACTTCTTCCTTCTTTCTCGAGTGGACTTATGAGAATTGGTTTGAAGAAGAGAGATCTAGATCTTGATAGTATCAGAACAGCTAGAATGGTACGAGAAAAACTAGGATTAGGCAGACCTGTGTTGGGTGCATATGATCAGTATGTTGGCAAACCAACCGATGAGGGCATAGTACCTTTGAAGAATTATTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCTCCGCAGAAATTTAATGTCATATTTGATACTGGTAGTTCCAACCTATGGGTTCCATCATCAAAGTGCTATTTTTCTCTTGCCTGCTATACCCATAAATGGTACAAGCCAAAGAAGTCCAAAACATATATCAAAAATGGAACTTCGTGTAAAATAACCTATGGATCTGGATCAATATCTGGTTTTTTCAGTAAAGATAATGTTAAAGTTGGTGATATTGTTGTCAAGAAACAGGATTTCATTGAGGCAACTCGAGAAGGAAGTCTTTCCTTTCTGTTAGCGAAGTTTGATGGATTACTCGGGCTTGGGTTTCAGGAGATCTCTGTTGAAAGTGCTGTGCCATTATGGTACAATATGGTGCAGCAAAATCTTGTAAGTGAGCAGGTGTTCTCTTTTTGGCTCAATGGCGATCCAAATGCGAAAGAGGGCGGAGAACTAGTTTTTGGAGGTGTTGATCCAAAACACTTCAAGGGAAATCACACTTATGTCCCAGTCACTAGAAAAGGCTACTGGCAGATTGAAATGGGAGACTTTTTCATTGGAGGTGTCTCGACAGGTGTCTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTGCTGTTGTAACTGAAATCAATCATGCAATTGGAGCTGAAGGAGTTCTAAGCGTAGAATGTAAGGAAGTTGTTTCTGAATATGGAGAAATGTTATGGGATCTCTTGATATCTGGGGTACGACCTGATGATGTGTGCTCACAGGTTGGTTTATGTTTTGCCAAAAAAGGTCAATCAGAGAGCAATGGAATTGAGATGGTGACTGAAAAGGAACAGAGAAAGTTGTCAGCTAAAGATACTGCTTTGTGTGCTCCCTGTCAAATGCTTGTGATTTGGATTCAGAATCAACTAAAACAACAGAAGACAAAGGACACAGTTTTCAACTATGTGAATCAGCTGTGCGAGAGCTTGCCAAGTCCAAATGGAGAGTCAGTAGTTAACTGTAATGGCATTTCTGGATTACCAAACATCACATTTACTGTTGGAGACAAACCTTTCACCCTCACTCCTGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCACGGGGTCCTCTTTGGATTCTTGGGGATGTTTTCATGAGGGTGTATCACACTGTCTTTGACTATGGCAATCTCAGAGTTGGTTTCGCCAAAGCTGCATAA 1563 0.4107 MQKLKGKRFSLKMGNTYLLFTFCLWALTCSLLPSFSSGLMRIGLKKRDLDLDSIRTARMVREKLGLGRPVLGAYDQYVGKPTDEGIVPLKNYLDAQYYGEIGIGTPPQKFNVIFDTGSSNLWVPSSKCYFSLACYTHKWYKPKKSKTYIKNGTSCKITYGSGSISGFFSKDNVKVGDIVVKKQDFIEATREGSLSFLLAKFDGLLGLGFQEISVESAVPLWYNMVQQNLVSEQVFSFWLNGDPNAKEGGELVFGGVDPKHFKGNHTYVPVTRKGYWQIEMGDFFIGGVSTGVCEGGCAAIVDSGTSLLAGPTAVVTEINHAIGAEGVLSVECKEVVSEYGEMLWDLLISGVRPDDVCSQVGLCFAKKGQSESNGIEMVTEKEQRKLSAKDTALCAPCQMLVIWIQNQLKQQKTKDTVFNYVNQLCESLPSPNGESVVNCNGISGLPNITFTVGDKPFTLTPEQYILKTGEGIAEVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYGNLRVGFAKAA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01939 520 PRINTS Pepsin (A1) aspartic protease family signature 249 262 IPR001461 GO:0004190|GO:0006508
Viun7g01939 520 PRINTS Pepsin (A1) aspartic protease family signature 299 310 IPR001461 GO:0004190|GO:0006508
Viun7g01939 520 PRINTS Pepsin (A1) aspartic protease family signature 103 123 IPR001461 GO:0004190|GO:0006508
Viun7g01939 520 PRINTS Pepsin (A1) aspartic protease family signature 493 508 IPR001461 GO:0004190|GO:0006508
Viun7g01939 520 ProSiteProfiles Saposin B type domain profile. 390 431 IPR008139 -
Viun7g01939 520 ProSiteProfiles Saposin B type domain profile. 327 367 IPR008139 -
Viun7g01939 520 FunFam Lysosomal aspartic protease 377 519 - -
Viun7g01939 520 CDD phytepsin 87 518 IPR033869 GO:0004190
Viun7g01939 520 SUPERFAMILY Acid proteases 29 519 IPR021109 -
Viun7g01939 520 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 299 310 IPR001969 GO:0004190|GO:0006508
Viun7g01939 520 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 81 518 IPR001461 GO:0004190|GO:0006508
Viun7g01939 520 Pfam Eukaryotic aspartyl protease 96 519 IPR033121 -
Viun7g01939 520 SUPERFAMILY Saposin 328 429 IPR011001 -
Viun7g01939 520 Pfam Saposin-like type B, region 2 331 363 IPR008138 -
Viun7g01939 520 Gene3D Acid Proteases 40 255 IPR021109 -
Viun7g01939 520 Pfam Saposin-like type B, region 1 393 429 IPR007856 GO:0006629
Viun7g01939 520 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 112 123 IPR001969 GO:0004190|GO:0006508
Viun7g01939 520 Gene3D - 327 429 - -
Viun7g01939 520 ProSiteProfiles Peptidase family A1 domain profile. 97 517 IPR033121 -
Viun7g01939 520 Gene3D Acid Proteases 256 520 IPR021109 -
Viun7g01939 520 FunFam Lysosomal aspartic protease 83 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01939 Viun-Chr7 24554181 24557927 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01939 K08245 - gmx:547993 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01939 7 24554181 24557927 Viun7g01939 7 24554181 24557927 ECH
Viun1g02944 1 38235244 38239844 Viun7g01939 7 24554181 24557927 PCT