Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02944 ATGGGTGAGCATGATCAGTTTATTGGTAAGGCAAAGGGTGAAGATATTGTACCTTTGAAAAACTATTTGGATGCTCAGTATTTTGGTGAGATTGGAATTGGCACACCCCCTCAGACCTTCACTGTTGTGTTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCATCAAAATGCTACTTTTCTCTTGCTTGCTATACCCATAACTGGTACAAGCCAAAGAAATCCAGAACATATATCAAAAATGGAACATCATGTAAAATAAACTATGGATCTGGATCAATATCTGGTTACTTCAGTCAAGATAGTGTTAAAGTTGGTAACGCTGTTGTCAAGCAACTGGATTTCATTGAAGCTACCCGAGAAGGAAGTCTTTCCTTTCTGTCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGAAAATGCTGTTCCATTATGGTACAAAATGGTGGAGCAAAATCTTATCAGTGAGAAGGTGTTTTCTTTTTGGTTGAATGGGGATCCAAATGCGAAAAAAGGTGGTGAACTAGTTTTCGGGGGTGTTAACCCGAAGCACTTCAAAGGAGACCACACTTATGTTCCAGTTACTGAAAAAGGTTACTGGCAGATTGAAATTGGAGATTTTTTCATTGGAGGTGCTTCTACAGGTGTTTGTGCGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTGGCTGGTCCAACTCCTGTTGTAGCTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGATGTCGTTTCTCAATATGGAGAGATGATATGGGATCTCTTGGTAGCAGGGGTGAAACCTGATGACATATGTTCCCAAGTTGGTTTATGTTCCGCCAAAAGGATTCAATCTAAGAGGTCAGAAAGCCCTGGGATTGAAATGGTAACTGAAAAGGAACAGAGTGAGTTGACAGCAAGAGATACTCCCTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAACAAACAAAGGACAAAGTATTCAACTATGTGAATCAACTGTGTGAGAGCTTGCCTAGTCCCTCTGGAGAGTCTGTGATAAGTTGTAGTAGTCTTTCCAAGTTGCCAAACATTACATTCACAATTGGAGATAAACCTTTTGTCCTTACACCAGAGCAGTATATTTTGAGAACTGGAGAAGGCATTACAGAAGTATGCCTTAGTGGGTTTATGGCTTTTGATGTTCCTCCTCCACGGGGTCCATTGTGGATTCTTGGGGATATTTTCATGAGGGCATATCACACCATCTTTGACTACGGAAATCTCCAAGTTGGGTTTGCTCAAGCTGTGTGA 1362 0.4126 MGEHDQFIGKAKGEDIVPLKNYLDAQYFGEIGIGTPPQTFTVVFDTGSSNLWVPSSKCYFSLACYTHNWYKPKKSRTYIKNGTSCKINYGSGSISGYFSQDSVKVGNAVVKQLDFIEATREGSLSFLSAKFDGILGLGFQEISVENAVPLWYKMVEQNLISEKVFSFWLNGDPNAKKGGELVFGGVNPKHFKGDHTYVPVTEKGYWQIEIGDFFIGGASTGVCAGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKDVVSQYGEMIWDLLVAGVKPDDICSQVGLCSAKRIQSKRSESPGIEMVTEKEQSELTARDTPLCSSCQMLVLWIQNQLKQKQTKDKVFNYVNQLCESLPSPSGESVISCSSLSKLPNITFTIGDKPFVLTPEQYILRTGEGITEVCLSGFMAFDVPPPRGPLWILGDIFMRAYHTIFDYGNLQVGFAQAV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02944 453 Pfam Saposin-like type B, region 1 325 362 IPR007856 GO:0006629
Viun1g02944 453 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 9 451 IPR001461 GO:0004190|GO:0006508
Viun1g02944 453 Gene3D Acid Proteases 2 185 IPR021109 -
Viun1g02944 453 ProSiteProfiles Saposin B type domain profile. 257 297 IPR008139 -
Viun1g02944 453 ProSiteProfiles Peptidase family A1 domain profile. 27 450 IPR033121 -
Viun1g02944 453 PRINTS Pepsin (A1) aspartic protease family signature 33 53 IPR001461 GO:0004190|GO:0006508
Viun1g02944 453 PRINTS Pepsin (A1) aspartic protease family signature 426 441 IPR001461 GO:0004190|GO:0006508
Viun1g02944 453 PRINTS Pepsin (A1) aspartic protease family signature 229 240 IPR001461 GO:0004190|GO:0006508
Viun1g02944 453 PRINTS Pepsin (A1) aspartic protease family signature 179 192 IPR001461 GO:0004190|GO:0006508
Viun1g02944 453 ProSiteProfiles Saposin B type domain profile. 323 364 IPR008139 -
Viun1g02944 453 CDD phytepsin 17 451 IPR033869 GO:0004190
Viun1g02944 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 42 53 IPR001969 GO:0004190|GO:0006508
Viun1g02944 453 FunFam Aspartic proteinase A1 257 362 - -
Viun1g02944 453 FunFam Lysosomal aspartic protease 13 255 - -
Viun1g02944 453 SUPERFAMILY Acid proteases 13 452 IPR021109 -
Viun1g02944 453 Pfam Eukaryotic aspartyl protease 26 452 IPR033121 -
Viun1g02944 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 229 240 IPR001969 GO:0004190|GO:0006508
Viun1g02944 453 Pfam Saposin-like type B, region 2 261 293 IPR008138 -
Viun1g02944 453 SUPERFAMILY Saposin 258 362 IPR011001 -
Viun1g02944 453 Gene3D - 257 362 - -
Viun1g02944 453 FunFam Lysosomal aspartic protease 316 452 - -
Viun1g02944 453 Gene3D Acid Proteases 187 452 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02944 Viun-Chr1 38235244 38239844 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02944 K08245 - gmx:548009 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02944 1 38235244 38239844 Viun1g02944 1 38235244 38239844 ECH
Viun1g02944 1 38235244 38239844 Viun7g01939 7 24554181 24557927 PCT