Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01823 ATGAATCACGGCCGTCTGATTTCTGGTGGAGGATGGCTACTCCGGCGACTTTGCACGGCGGCTGAGAGTCCAGCAAAAGGTCCAAACCTCTATCGAATGTTATCGGCGTTGGACATGACTAGAGGAAGCGTGTCGGAAATATTGGACAACCATGTAATGCAAGGCAAAGCCATAAGAAAAGCAGAACTCGACAGGTGTGTGGAGCAGCTCCGAAGGTATCGCAGATTTCAACATGCACTCGAGATAATTGAATGGATGGAGATGAAGAAAATTGACTTAACCTGGAATAATTATGCAGTGCAATTAGATCTCGTGTCCAAGACCAAAGGGTTGGTTGCGGCTGAAGAGTTTTTCAACGGTCTTCCTCCTCCAGCCAAGAACAAGTATACGTATGGTGCTCTCTTGAATTGTTACTGCAAGGAACTAATGAAAGACAAGGCATTGAGTCATTTTGACAAAATGGATGAATTGGGTTATGTCACTTCTCTGTCTTTCAACAATTTGATGAGTTTGTATATGAGAAGTGGTGAACCCCAGAAAGTGCCTCACCTGGTGGAGCTAATGAAGAAGAGAAACCTTCCCTTGTCTTCATTCACGTATTATATCTGGATGAACGGCTGCGCCTCTTTGGGCGATCTTGATGGGGTGGAGAGAATCTACGAGGAGATGAAAACTGAAGAAGATCGAATTGGTTGGCAGGCTTACAGCAACCTTGCTGCAATTTATGTGAAGGTTAAGGACTTTGAGAAGGCTGAAATGATGCTTAAGGAGCTGGAGAAACTAGCTAAGCCACGGCAGCGTGATGCTTATCATTGCTTGCTTGGTCTCTATGCTGGGACTGGTAATCTTGAAGAGGTTCACAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTCACCAATTTGAGCTATCTGGCTATGCTTAGTTCCCTCCGAAAGCTTAATGATATAGAGGGCTTAACAAAATGCTTTAAAGAGTGGGAAGCTAGTTGTGTTAGCTATGATGTGAGGTTAGCTGGTGTCTGTGTTAGTGCTTATTTGGGTCACAACATGGTGGAAGAAGCTGCATTGGTGTTTGAGGGGGCTAGCAGGAAGAGCAAAAGGCCTTTGTTTAGGTTTGAGGAAATGTTCATGTTGTATTTCTTGGAGAAACGTCAGTTGGATGCTGCTGTGAGGCACTTGGAGGCGGCACTTTCAGAAGTCAAGGGTGATGAATGGCGTCCTTCACCACAAGTTGTTGGGGCTTTTCTGAAGTACTACGAAGAAGAGACGGATATGGATGGTGTTGATGAGTTGTATAAGATTCTCAAGGCTAAGAATTTTGATGATTCCTGGATTACAACTTGCATTAATGCGGCCAAAGCGTCTCCTGAAACTGATCCAATATTGAAGGAAGATGATCCTCAAAACTATGCACAGGAGAACTAG 1428 0.4468 MNHGRLISGGGWLLRRLCTAAESPAKGPNLYRMLSALDMTRGSVSEILDNHVMQGKAIRKAELDRCVEQLRRYRRFQHALEIIEWMEMKKIDLTWNNYAVQLDLVSKTKGLVAAEEFFNGLPPPAKNKYTYGALLNCYCKELMKDKALSHFDKMDELGYVTSLSFNNLMSLYMRSGEPQKVPHLVELMKKRNLPLSSFTYYIWMNGCASLGDLDGVERIYEEMKTEEDRIGWQAYSNLAAIYVKVKDFEKAEMMLKELEKLAKPRQRDAYHCLLGLYAGTGNLEEVHRVWNSLKSVSPVTNLSYLAMLSSLRKLNDIEGLTKCFKEWEASCVSYDVRLAGVCVSAYLGHNMVEEAALVFEGASRKSKRPLFRFEEMFMLYFLEKRQLDAAVRHLEAALSEVKGDEWRPSPQVVGAFLKYYEEETDMDGVDELYKILKAKNFDDSWITTCINAAKASPETDPILKEDDPQNYAQEN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01823 475 Gene3D Tetratricopeptide repeat domain 244 460 IPR011990 GO:0005515
Viun7g01823 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Viun7g01823 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Viun7g01823 475 Pfam PPR repeat family 163 208 IPR002885 -
Viun7g01823 475 Gene3D Tetratricopeptide repeat domain 59 243 IPR011990 GO:0005515
Viun7g01823 475 FunFam Pentatricopeptide repeat-containing protein mitochondrial 60 268 - -
Viun7g01823 475 PANTHER OS12G0527900 PROTEIN 26 455 - -
Viun7g01823 475 Pfam PPR repeat 234 260 IPR002885 -
Viun7g01823 475 Pfam PPR repeat 129 158 IPR002885 -
Viun7g01823 475 SUPERFAMILY TPR-like 125 326 IPR011990 GO:0005515
Viun7g01823 475 NCBIfam pentatricopeptide repeat 198 225 IPR002885 -
Viun7g01823 475 NCBIfam pentatricopeptide repeat 129 160 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01823 Viun-Chr7 23351932 23353771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01823 30 465 EF-hand Containing Proteins AT1G02150 32.816 8.27e-77 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01823 - - gmx:100781679 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01823 7 23351932 23353771 Viun7g01823 7 23351932 23353771 ECH
Viun7g01823 7 23351932 23353771 Viun1g02563 1 35794678 35795968 PCT