Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01762 ATGTTTATGGTAACTGTGCTTTTACTCATAGTATTAAGCACTGGTGTGGGAGGTCAAGATGATCATGGACCGTGTAAACAGAAAGTGTTGAATCCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCAGTTGGAGATGGAAAAACATTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCCGACAAAGGTGGTGCTCAATTATTTGTTCCATCTGGGAAATGGCTTACCGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGGCGCAACCATCATTGCATCGCAGGATTATGCACACTGGCCTGCAGTGGATCCCCTACCCTCGTATGGTCGGGGAATTGATGTTCCAGGTGGGAGATATAGCAGTTTGATTTATGGACGCAACTTAAGTGATGTGGTGATTACAGGTGACAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGAACTCATTCCTTAAACCACAGCAGACCACATATTATAGAACTGGTTAATTCTGATGATATCGTAATCTCAAATTTGACCCTTTTAAACTCTCCTGCCTCGAGCATTCATCCAGTGTATTGCAGCAATGTCAGAATCCAAAACATAACAGCTCATGCACCACCCGAGTTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCCGAGCACGTTTGCATTGACAACAGCAATATTAGCACCGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCTTATGGCAAACCAACCTCGAATGTCCACATCAAGGGTGTTTATCTGCAATCATCATCTGGTGCTGGCCTAGCATTTGGGAGCGAGATGTCCGGAGGCATATCTGGTATAACAGCTGAGCATCTCTATATTATAAACTCGACCATTGGCATTGAATTGAAGACAACTAGAGGTCGAGGTGGCTATATGAGAAACATCTCCATTTCTAGCACAACATTGGAAAATATTTACTTGGGTATTAGCATGACAGGATTCTCTGGGTCTCATCCCGATGACAAGTATGATCCTAATGCAGTTCCGGTCGTTGGTAATGTTACTTTTGAGAATGTGATTGGTGCAAATGTTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCACCCTTCACTCCTATATTCCTTTCAAATGTGGTTTTTTCTACCGGTTCTGAGTCATTTTCTCCATGGTTTTGTTCTAATGTAAATGGAGTCTCTAAGGAGGTGTTTCCCGAGCCATGTCCTGACCTGCAGAACACGCTGTCAAACTTTTCGTCCATCTTTTCTTCTCTACATCCATCGTACAGTTATGTCTCAAGCGCATGA 1359 0.4312 MFMVTVLLLIVLSTGVGGQDDHGPCKQKVLNPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAQLFVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWPAVDPLPSYGRGIDVPGGRYSSLIYGRNLSDVVITGDNGIIDGQGSVWWDLIRTHSLNHSRPHIIELVNSDDIVISNLTLLNSPASSIHPVYCSNVRIQNITAHAPPEFPYTSGIVPDSSEHVCIDNSNISTGHDAIVLKSGWDQYGVAYGKPTSNVHIKGVYLQSSSGAGLAFGSEMSGGISGITAEHLYIINSTIGIELKTTRGRGGYMRNISISSTTLENIYLGISMTGFSGSHPDDKYDPNAVPVVGNVTFENVIGANVAIAGNFSGIVDSPFTPIFLSNVVFSTGSESFSPWFCSNVNGVSKEVFPEPCPDLQNTLSNFSSIFSSLHPSYSYVSSA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01762 452 Gene3D - 25 420 IPR012334 -
Viun7g01762 452 PANTHER PECTIN LYASE-RELATED 19 432 - -
Viun7g01762 452 Pfam Glycosyl hydrolases family 28 133 414 IPR000743 GO:0004650|GO:0005975
Viun7g01762 452 SUPERFAMILY Pectin lyase-like 26 441 IPR011050 -
Viun7g01762 452 SMART pbh1 231 252 IPR006626 -
Viun7g01762 452 SMART pbh1 204 230 IPR006626 -
Viun7g01762 452 SMART pbh1 265 287 IPR006626 -
Viun7g01762 452 SMART pbh1 322 343 IPR006626 -
Viun7g01762 452 SMART pbh1 293 314 IPR006626 -
Viun7g01762 452 SMART pbh1 181 203 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01762 Viun-Chr7 22565606 22569474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01762 1 440 Glycoside Hydrolase AT3G16850 58.050 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01762 - - gmx:100801823 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01762 7 22565606 22569474 Viun7g01762 7 22565606 22569474 ECH
Viun1g02784 1 37186606 37189579 Viun7g01762 7 22565606 22569474 PCT