Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02784 ATGCAACTGTTCTTGCACTGGATTCAGAACTTCGTGGCCTCATTGCAGTTTCAACTTGCTGCTGCTCAAGCACACATGAAGGAGCTAGTGGCAGTGCTTTTCCTTGTGGCAATATGTGCTGCTGTGGAAAGCAACGGAGAAGACAACGGTGGACCATGTAAACAGAATGCGTTGAATGCGAGGCCTCACAGTGTGTCGATCTTAGAGTTTGGGGCTGTTGGAGATGGAATAACACTGAACACCGTTGCGTTCCAAAACGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGGGGTGCCCAACTATATGTTCCATCTGGTACATGGCTTACTGGGAGTTTTAACCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGTGCTACCATCATTGCATCTCAGGATTGTTCTCATTGGGATGTTGTGGATTCGCTCCCTTCTTATGGTAGAGGAATTGGGAGATATCGCAGTTTAATATACGGACAGAATTTAAGCGATGTGGTGGTTACTGGTGATAATGGAACAATAGACGGGCAAGGTTCTGTCTGGTGGGAGCTGTTCAGTTCTCATTCCTTAAACTACAGTCGACCAAATCTTATAGAATTTGTTGATTCTGTTGATGTCATAATTTCCAATTTGACTTTTGTAGACTCTCCAGCTTGGGGCATCCATCCGGTATATTGCAGTAACGTTCAAATTCAGAACATTACTTCTCGTGCACCTGCCGAATCCCCTTACACAAGTGGCATAGTTCCAGATTCTTCTAAGGATGTTTGCATCGAGAACAGTAACATTAGCTCTGGTCATGATGCAATTGTGTTGAAGAGTGGTTGGGATCAGTATGGAATTGCCTATGGAAAACCAACCTCGAGTGTTCAAATCAGCAATGTTTACCTACAATCATCGTCAGGTGCTGGCTTGGCTTTTGGGAGTGAGATGTCAGGGGGAATATCAGATGTTATTGCAGAAAAGCTTCATATACTTAACTCGCCTATAGGCATTGAACTGAAAACAACTAGGGGCAGAGGTGGCTATATGAAAGGCATCCTCATTTCTGATGCAGAATTGGAAAATATTCATTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGACGACAAGTATGACACAAGTGCACTTCCAGTTGTTGATAGCATTACTTTCAAGAATGTGATGGGTGCAAATATTGATGTTGCGGGGAATTTTTCAGGAATATTTGAATCACCATTCTCAACAATCTGTCTTTCAAACGTGACTTTTTCTCTCAGTTATGAGCTATCCCCTTCATGGTTCTGTTCTAATGTGATTGGTTTCTCCGAGGAGGTGATTCCTGAGCCATGTCCCGATCTCCAGAGCTCGTATTCCAAGTTCTCCTTTTCTTGCTTTCCTTCCCTATATCCACACTCTAGTAGTAATATCTCAGGCTCTTTAGACCAAGAACTATAG 1452 0.4325 MQLFLHWIQNFVASLQFQLAAAQAHMKELVAVLFLVAICAAVESNGEDNGGPCKQNALNARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLERGATIIASQDCSHWDVVDSLPSYGRGIGRYRSLIYGQNLSDVVVTGDNGTIDGQGSVWWELFSSHSLNYSRPNLIEFVDSVDVIISNLTFVDSPAWGIHPVYCSNVQIQNITSRAPAESPYTSGIVPDSSKDVCIENSNISSGHDAIVLKSGWDQYGIAYGKPTSSVQISNVYLQSSSGAGLAFGSEMSGGISDVIAEKLHILNSPIGIELKTTRGRGGYMKGILISDAELENIHLGISMTGYSGFHPDDKYDTSALPVVDSITFKNVMGANIDVAGNFSGIFESPFSTICLSNVTFSLSYELSPSWFCSNVIGFSEEVIPEPCPDLQSSYSKFSFSCFPSLYPHSSSNISGSLDQEL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02784 483 Gene3D - 53 438 IPR012334 -
Viun1g02784 483 SMART pbh1 346 367 IPR006626 -
Viun1g02784 483 SMART pbh1 205 227 IPR006626 -
Viun1g02784 483 SMART pbh1 380 402 IPR006626 -
Viun1g02784 483 SMART pbh1 289 311 IPR006626 -
Viun1g02784 483 SMART pbh1 255 276 IPR006626 -
Viun1g02784 483 SMART pbh1 228 254 IPR006626 -
Viun1g02784 483 SUPERFAMILY Pectin lyase-like 55 453 IPR011050 -
Viun1g02784 483 PANTHER PECTIN LYASE-RELATED 33 469 - -
Viun1g02784 483 Pfam Glycosyl hydrolases family 28 156 437 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02784 Viun-Chr1 37186606 37189579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02784 26 464 Glycoside Hydrolase AT3G16850 60.811 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02784 - - gmx:100787190 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02784 1 37186606 37189579 Viun1g02784 1 37186606 37189579 ECH
Viun1g02784 1 37186606 37189579 Viun7g01762 7 22565606 22569474 PCT