Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01653 ATGACCGGAGTGGTCATGGTTACCAAGGGTGGTAGATGCGGCGGCGGTGGGAAGCGGTCGAGGGCGGCGCGAACCGCCGAGGAAGAAGAGGAGCAGCAGAACCAGCTCTCTCTCGTGGCGTTTCTCTTGGCGGCCATCAGAAAATCGATGGTTTCGTGCAGGGTGGACCCGCCGGACGATGTAATCTCCACCGTCCACAACATGGAGATCGGATGGCCTACCAACGTTCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGTTTCCTCGGTCTTCCTTACGAGTTCCAAGTTGAGATCCCTGCTAGGGTCCCCAGTGCTAGTGTAAGTGTGTTCGGCGTCTCAGCAGAATCTATGCAGTGTTCTTATGATTCTAAAGGAAACAGTGTCCCCACTATTCTCCTGCTAATGCAGGACCGGCTATACTCACAGAGAGGCTTAAAGGCTGAGGGTATATTTCGCATAAACCCAGAAAATAGTCAAGAGGAGCATGTGAGGGACCAGTTGAATAGGGGCATTGTGCCTGATGACATTGATGTGCACTGCTTAGCGGGACTAATTAAAGCCTGGTTCCGAGAACTTCCTTCAGGAGTGCTAGATGGACTTTCCCCTGAGCAAGTTCTTCAATGCAACACAGAAGAAGAATCTGTTGATCTTGTGAAGCAGCTAAAGCCAACTGAGTCTGCCTTACTCAGCTGGGCCATTGATCTCATGGCCGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCACCAAACATGACTCAGATGTCTGATCCTCTAACTGCCCTGATGCATGCGGTTCAAGTGATGAACTTCCTCAAGACACTAATCATGAAGACACTTCGAGAACGTGAAGAAACAACAACAGGTGGGTATTCTCCCATGTCTTTTCATTCATCGGGACGCCACTCAGAGGATGAATATGACAGTCAGCGAGAAATGGACACTAGCGGTGAATTGAGAGGCACCAAATCAGATTATGATGCTCACTATGGCCACAGCAGTGAAGGGGAAGCTGAATCATTAAGCGAGATAGAGGAGTGCTTATTGAAGCAGTTGGATGACAACACAAAGGGATTCTCACAAGAACCTGCTGTTCATTTGGACAAGTACGTTAGCACCATAAGTTACTCTGCCTATAGCATGGAACCTTCTATCTCTGTTACTGATAACAAAGCTGGGAATTCCTGTTTGAGGACAACACTGACAGGTTTGGCCTCAAGTGTTGACACAAGTACTTCATCAATAGGATGTACAAGTACCAAAGATGTGGAGATGGTCGATAAGTATTCTGATTCTATTTCACCTGTACCACTCCTTGCTTCTAGCTAA 1365 0.4747 MTGVVMVTKGGRCGGGGKRSRAARTAEEEEEQQNQLSLVAFLLAAIRKSMVSCRVDPPDDVISTVHNMEIGWPTNVQHITHVTFDRFNGFLGLPYEFQVEIPARVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQDRLYSQRGLKAEGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESVDLVKQLKPTESALLSWAIDLMADVVEEEEFNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLIMKTLREREETTTGGYSPMSFHSSGRHSEDEYDSQREMDTSGELRGTKSDYDAHYGHSSEGEAESLSEIEECLLKQLDDNTKGFSQEPAVHLDKYVSTISYSAYSMEPSISVTDNKAGNSCLRTTLTGLASSVDTSTSSIGCTSTKDVEMVDKYSDSISPVPLLASS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01653 454 SUPERFAMILY GTPase activation domain, GAP 111 289 IPR008936 -
Viun7g01653 454 PANTHER MKIAA1688 PROTEIN 22 362 IPR044785 GO:0005096
Viun7g01653 454 MobiDBLite consensus disorder prediction 296 335 - -
Viun7g01653 454 Gene3D CRIB domain 65 101 IPR036936 -
Viun7g01653 454 SMART RhoGAP_3 129 292 IPR000198 GO:0007165
Viun7g01653 454 Pfam P21-Rho-binding domain 69 100 IPR000095 -
Viun7g01653 454 CDD RhoGAP 132 288 - -
Viun7g01653 454 Gene3D Rho GTPase activation protein 102 299 IPR008936 -
Viun7g01653 454 ProSiteProfiles Rho GTPase-activating proteins domain profile. 115 296 IPR000198 GO:0007165
Viun7g01653 454 FunFam Rho GTPase-activating protein 5 100 293 - -
Viun7g01653 454 ProSiteProfiles CRIB domain profile. 70 83 IPR000095 -
Viun7g01653 454 Pfam RhoGAP domain 132 266 IPR000198 GO:0007165
Viun7g01653 454 SMART PBD_5 70 104 IPR000095 -
Viun7g01653 454 MobiDBLite consensus disorder prediction 311 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01653 Viun-Chr7 21336111 21339092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01653 - - gmx:100801481 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01653 7 21336111 21339092 Viun7g01653 7 21336111 21339092 ECH
Viun1g02678 1 36580443 36583228 Viun7g01653 7 21336111 21339092 PCT