Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02678 ATGACGGGGCAAGTCGTGGTCACCAGCGTTGGCGGATGCGGTGCTGGGAAGGGGCGGAGAGCCGCCGAGGAGGACCAAAACCCGGCCTCGCCGGTGGCGGTTCTGTTGGCGGCGCTGAGGAAATCGATGGTGGCTTGCAGTGTGGACAGTCCCGACGATGTTATCTCCGCCGTCCATCACCCCATGGAGATCGGATGGCCCACAAACGTCAAGCATGTTAGTCATGTCACTTTCGATCGCTTCAATGGGTTTCTGGGTCTTCCCCTTGAGCTGGAGGTTCATGTACCCGCTCCTGTTCCCAGTGCTAGCGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTACGATTCAAAAGGAAACAGTGTCCCCACCATTCTACTGCTAATGCAAGAGCGATTATACTCACAGGGTGGCCTAAAGGCTGAAGGTATATTTCGCATAAATCCAGAGAACACTGAAGAGGAGCATTTGAGGGAGCAGTTGAATAAGGGTGTTGTGCCTGATGACATTGATGTCCACTGCTTGGCCGGCCTAATCAAAGCATGGTTCAGAGAACTTCCTTCAGGAGTTCTTGATGGACTTTCCCCTGAGCAAGTTATTGAGTGCGACACAGAAGAAGATTGTGTTCAGCTTGTGAAGCAGCTAAAGCCAACCGAGTCAGCCTTGCTCAACTGGGCCATTGATCTCATGGCTGATGTTGTAGCTGAAGAGGATTACAACAAAATGGATGCAAGAAACATTGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCATTAACTGCTCTGATGCATGCGGTGCAAGTGATGAATTTACTGAAGACACTAATTCTGAACACACTGAGAAAACGTGAGGAAGCAGCCGAAGGAGGATACTCGCCCATGTCATCTGGTTCATCTGATCGCCAATCCGAGGGTGACTATGATAGTCAGCAAGATGATGATGATGGTGATCATCATGATCATCATCTTCATGATGTTATCTACAGTCCTACCAGTGAAGAGGACGAGGAGGGTGATGCATCATCAGTGAGTGAGATAGTGGAGTGCTTCTTGAAACGTTTGGATGAGAAAACAAAAAGATTCTCTGAAAAACCTGTAGATAATAACTTGGAATCCAATTTATCATTTACTGACATAAAAACTGAGAATTCCTGCTCAAGTTTCTCTTCCGAAGATGACTCAAGAACAACTCTTACTGCCGAGGAATCAAATGCTGACACAAGTAGTTCATCAATGGGAAGCACGAGCACCAATGATGTGGAGATGATCGATAAATTTCCAGATCCTGTTTCTCTAGTTCCACTGTTTGCATCTAGTTAA 1338 0.4709 MTGQVVVTSVGGCGAGKGRRAAEEDQNPASPVAVLLAALRKSMVACSVDSPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENTEEEHLREQLNKGVVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVIECDTEEDCVQLVKQLKPTESALLNWAIDLMADVVAEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILNTLRKREEAAEGGYSPMSSGSSDRQSEGDYDSQQDDDDGDHHDHHLHDVIYSPTSEEDEEGDASSVSEIVECFLKRLDEKTKRFSEKPVDNNLESNLSFTDIKTENSCSSFSSEDDSRTTLTAEESNADTSSSSMGSTSTNDVEMIDKFPDPVSLVPLFASS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02678 445 MobiDBLite consensus disorder prediction 388 427 - -
Viun1g02678 445 MobiDBLite consensus disorder prediction 292 329 - -
Viun1g02678 445 SMART PBD_5 64 98 IPR000095 -
Viun1g02678 445 ProSiteProfiles Rho GTPase-activating proteins domain profile. 109 289 IPR000198 GO:0007165
Viun1g02678 445 CDD RhoGAP 126 284 - -
Viun1g02678 445 Gene3D Rho GTPase activation protein 96 288 IPR008936 -
Viun1g02678 445 FunFam Rho GTPase-activating protein 5 94 287 - -
Viun1g02678 445 SMART RhoGAP_3 123 286 IPR000198 GO:0007165
Viun1g02678 445 PANTHER MKIAA1688 PROTEIN 22 401 IPR044785 GO:0005096
Viun1g02678 445 CDD CRIB 62 92 - -
Viun1g02678 445 MobiDBLite consensus disorder prediction 388 428 - -
Viun1g02678 445 ProSiteProfiles CRIB domain profile. 64 77 IPR000095 -
Viun1g02678 445 Pfam RhoGAP domain 126 260 IPR000198 GO:0007165
Viun1g02678 445 Pfam P21-Rho-binding domain 63 91 IPR000095 -
Viun1g02678 445 SUPERFAMILY GTPase activation domain, GAP 105 284 IPR008936 -
Viun1g02678 445 Gene3D CRIB domain 59 95 IPR036936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02678 Viun-Chr1 36580443 36583228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02678 - K20642 gmx:100812700 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02678 1 36580443 36583228 Viun1g02678 1 36580443 36583228 ECH
Viun1g02678 1 36580443 36583228 Viun7g01653 7 21336111 21339092 PCT