Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01441 ATGTCTGGAGAAGTTTATGACGGACAAGATGCTGGCTATGTGCCCGAGAACCCTGAGTTTCCTCAAAATCATTCTGAGGAACATGATGGAGGAAATGTGATTGATGACTCAGGGTTTCAGCAATTGCAGCCTGATGAACACGATGAGGCCAATTTGGCCGTGGATGCTGATGTTCCTGAAAATAATTTTGATGGGAATGATGGAGAAGGTTTGCCTGAAAACCCTGATTTTCCTCCGCAAGAACATGCTGAGGAACAGCATGTTGAAGGAGATATGCCTGAGAATTTTGTCTCTGAGGAGAAACAGGAATCTCAGGAGGAGTTGAAAGTGGGTGAAGTAAAAAAATGGCCAGGGTGGCCTGGGGAAAATGTTTTCAGGATGTTGGTTCCCGTGCAAAAGGTTGGCAGTATTATTGGTCGTAAAGGCGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGTATAAAAATTCTTGATGGCCCCCCTGGAACTGCAGAAAGAGCTGTAATGGTTTCTGCAAAAGAAGAGCCGGATCGCACCATCCCACCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAGGTTGTCAATGTAGAGCCTCAATCTGCTGATGGTGGTGCATCAGGTGCAGGACGCACAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAAGCAGGGAGCTTGATTGGGAAACAGGGAGCCACTATAAAATCCTTTCAAGATTCCACGGGTTGTAATATACGTGTTCTTGGTTCAGAACACCTCCCAGTATTTGCTTTGCGAGACGACAGTGTTGTTGAAATACAAGGAGAATCCTCTGGGGTTCACAAGGCAGTTGAACTTGTTGCAGTTCATCTACGTAAATTCTTGGTTGACCGCAGCATAGTTGGTGTATTTGAAACACAGATGCAAAGGCCAGATGTTCGGGCAAACCAGAATGTGCCACATGGTCCACCACACCAACCTTGGGGTCCTCCTCAAGGTTTTCCAGCTCCTGGACCTGTTAGTGGTGGTGGACCTGCTTTCCCACCCAATCCTCAGTATATGCCCCCTTCGCATAACTATGATAATTACTACCCACCTGCTGACCTGCCTCCCATGGACAAGCACCTTCATCAGGGTCCTGCACCTGCCTACGGAAGAGATACTTCTATGGGAATTCATTCATCCAGTGTGCAACCGCAGCAATCTGTTGTGACTAAGGTCACGCAGCACATGCAAATTCCTCTGTCCTATGCTGATGCTGTTATTGGAGCATCAGGGACAAACATCAGCTACATCCGTCGTGCCAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCCGGAGAGATGACTGTTGAGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGAATTTCATGGCTGAAGCTGCTAGTGCAACTCAGGAACATATGGGGGGATCAATGAACCAAGGTTACAATTCCTATCCTACCAGTGCTCCTGTGTACGCATCTCCGCCCTCAAGCGCTGCTGCTCATGCAGGCCATGTACCTTCAGCAGATTATGGACCCGTTTATGGCACCAATTATGGCTATTGA 1587 0.4745 MSGEVYDGQDAGYVPENPEFPQNHSEEHDGGNVIDDSGFQQLQPDEHDEANLAVDADVPENNFDGNDGEGLPENPDFPPQEHAEEQHVEGDMPENFVSEEKQESQEELKVGEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAVMVSAKEEPDRTIPPAVDGLLRVHKQVVNVEPQSADGGASGAGRTVVTRLLVADTQAGSLIGKQGATIKSFQDSTGCNIRVLGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAVHLRKFLVDRSIVGVFETQMQRPDVRANQNVPHGPPHQPWGPPQGFPAPGPVSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPAPAYGRDTSMGIHSSSVQPQQSVVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASATQEHMGGSMNQGYNSYPTSAPVYASPPSSAAAHAGHVPSADYGPVYGTNYGY 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01441 528 SMART kh_6 401 471 IPR004087 GO:0003676
Viun7g01441 528 SMART kh_6 213 288 IPR004087 GO:0003676
Viun7g01441 528 SMART kh_6 121 194 IPR004087 GO:0003676
Viun7g01441 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 113 177 IPR036612 GO:0003723
Viun7g01441 528 Coils Coil 459 479 - -
Viun7g01441 528 Gene3D K Homology domain, type 1 389 478 IPR036612 GO:0003723
Viun7g01441 528 CDD KH-I_PEPPER_rpt1_like 122 190 - -
Viun7g01441 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 210 296 IPR036612 GO:0003723
Viun7g01441 528 ProSiteProfiles Type-1 KH domain profile. 214 283 - -
Viun7g01441 528 MobiDBLite consensus disorder prediction 1 90 - -
Viun7g01441 528 Gene3D - 122 292 - -
Viun7g01441 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 393 473 IPR036612 GO:0003723
Viun7g01441 528 MobiDBLite consensus disorder prediction 308 395 - -
Viun7g01441 528 Pfam KH domain 404 467 IPR004088 GO:0003723
Viun7g01441 528 Pfam KH domain 217 283 IPR004088 GO:0003723
Viun7g01441 528 Pfam KH domain 125 177 IPR004088 GO:0003723
Viun7g01441 528 MobiDBLite consensus disorder prediction 319 351 - -
Viun7g01441 528 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 114 493 - -
Viun7g01441 528 CDD KH-I_PEPPER_like_rpt3 402 470 - -
Viun7g01441 528 CDD KH-I_PEPPER_rpt2_like 216 288 - -
Viun7g01441 528 ProSiteProfiles Type-1 KH domain profile. 402 466 - -
Viun7g01441 528 ProSiteProfiles Type-1 KH domain profile. 122 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01441 Viun-Chr7 18469177 18475024 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01441 K21444 - gmx:100818363 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02071 1 32058571 32063277 Viun7g01441 7 18469177 18475024 PCT