Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02071 ATGGCCGAGCACGGTTTTGATGGTCATGATGAAGGATATGTACCGGAGGACCCTAATTTTCCTCATAATCACTCCGATGAACATGATGTAGGGACTGTTATTGATGGCTCTGGATTTCCTCATCTGCTGCCTGATGAACATGATGCAGTGGATTTGGTGGAGGATACCGATTTTCCTCAAAATCATTTTGATGAACATGAACATGATGCTGGAGGTTTGCCCGGAGACACGGACTCTCCTCAGCAGGAGCATGTTGAGGAAGACCATGGTGCTGGAGAAATGTCTGAGAATTTTGATTCTTTGCCGGTAGAGGGATCCGAGGCCGTTTTGAAAGGGAGTGAAATAAAAAAGTGGCCCGGGTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTCGGCAGTATTATTGGCCGAAAGGGTGAGTTTATAAAGAAGATTACAGAAGAGACTAAGGCGCGAATTAAAATTCTTGATGGTCCGCCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGGCCCATACCACCTGCTGTTGACGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGAACTTACAGATAGCGCTTTGACTGCTGGACGATCAGTTGTTACCAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACGATAAAATCCATTCAAGATGGTTCTGGTTGCACCATACGAGTTCTTGGTTCAGAACACCTGCCAGTATTTGCTCTGCGAGATGATAGTATTGTTGAAATTCAAGGGGATTCTACTGGTGTTCACAAGGCCATTGAACTTATTGCAGTTCATTTACGCAAGTTCTTGGTTGACCGCAGTATAGTTGGAGTTTTCGAGACACAGATGCAAACATCAGATGTCAGAGCTAACCAGAATGGACCACCACATCAAAATTGGGGTCCTCCTCCGCAAGGGTTTCCTGCTGGTGGTGGTGGTGGAGGACCTGCTTTTGCACCCAATCAACAGTATATGCCACCTACACATCACTATGATAGTTATTACCCACCCACTACTGAGTTGCCTCCCATGGATAAGCACCTTCATCAAGGTCCACCACCTGCCTATGCAAGGGATGCTTCTGTTGGAATTCATTCATCAAGTGCGCAACCACAACAATCTCTTGTAACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCATATGCAGATGCTGTTATTGGAGCATCTGGCACTAATATCAGTTATATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTTCCAGGGGAGATGACTGTCGAGATGAGTGGAACTTCTTCTCAAATACAGGCAGCCCAACAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAATGCGACGCAGGATCCACTGGGTGGATCAGTTAGCCAAGGTTACAGTGCCTATCCAACTAATGCTCCGGTTTACGCATCTCCCCCGTCTAGCACTGGTGCTCATACAGGCCACGTGCCTTCTGCAGATTATGGGCCCGTATATGGCACTAATTATGGGTATTGA 1581 0.4649 MAEHGFDGHDEGYVPEDPNFPHNHSDEHDVGTVIDGSGFPHLLPDEHDAVDLVEDTDFPQNHFDEHEHDAGGLPGDTDSPQQEHVEEDHGAGEMSENFDSLPVEGSEAVLKGSEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAVDGLLRVHKQVINVDRELTDSALTAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSEHLPVFALRDDSIVEIQGDSTGVHKAIELIAVHLRKFLVDRSIVGVFETQMQTSDVRANQNGPPHQNWGPPPQGFPAGGGGGGPAFAPNQQYMPPTHHYDSYYPPTTELPPMDKHLHQGPPPAYARDASVGIHSSSAQPQQSLVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEMSGTSSQIQAAQQLVQNFMAEAANATQDPLGGSVSQGYSAYPTNAPVYASPPSSTGAHTGHVPSADYGPVYGTNYGY 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02071 526 Gene3D - 124 293 - -
Viun1g02071 526 CDD KH-I_PEPPER_rpt2_like 217 289 - -
Viun1g02071 526 MobiDBLite consensus disorder prediction 310 338 - -
Viun1g02071 526 ProSiteProfiles Type-1 KH domain profile. 215 284 - -
Viun1g02071 526 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 116 179 IPR036612 GO:0003723
Viun1g02071 526 ProSiteProfiles Type-1 KH domain profile. 400 464 - -
Viun1g02071 526 CDD KH-I_PEPPER_like_rpt3 400 468 - -
Viun1g02071 526 Pfam KH domain 218 284 IPR004088 GO:0003723
Viun1g02071 526 Pfam KH domain 127 179 IPR004088 GO:0003723
Viun1g02071 526 Pfam KH domain 402 465 IPR004088 GO:0003723
Viun1g02071 526 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 116 486 - -
Viun1g02071 526 Coils Coil 457 477 - -
Viun1g02071 526 SMART kh_6 123 196 IPR004087 GO:0003676
Viun1g02071 526 SMART kh_6 399 469 IPR004087 GO:0003676
Viun1g02071 526 SMART kh_6 214 289 IPR004087 GO:0003676
Viun1g02071 526 MobiDBLite consensus disorder prediction 59 73 - -
Viun1g02071 526 ProSiteProfiles Type-1 KH domain profile. 124 191 - -
Viun1g02071 526 Gene3D K Homology domain, type 1 387 476 IPR036612 GO:0003723
Viun1g02071 526 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 391 471 IPR036612 GO:0003723
Viun1g02071 526 CDD KH-I_PEPPER_rpt1_like 124 192 - -
Viun1g02071 526 MobiDBLite consensus disorder prediction 59 99 - -
Viun1g02071 526 MobiDBLite consensus disorder prediction 1 28 - -
Viun1g02071 526 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 212 297 IPR036612 GO:0003723
Viun1g02071 526 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02071 Viun-Chr1 32058571 32063277 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02071 K21444 - gmx:100799901 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02071 1 32058571 32063277 Viun7g01441 7 18469177 18475024 PCT