Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01149 ATGGTGGGTATCATTTCGTTGGTCACAGGGAGGCCTGGACCCAGTGGATTTGGATCTGCCTCAACTGCTGAACAGGTTACTCAAGGAATTGATGCCAGCAACCTCACTGCAATAATCACAGGAGGAGCAAGTGGAATAGGGTTGGAGACAGCACGAGTGTTGGCTCTTCGAAAGGTCCATGTGATAATTGGTGCGAGGAACATGGAGTCTGCAAAGGAAGCTAAACAAGTGATACTGCATGAGAACGAGTCAGCTCGCGTGGACATATTGAAGCTCGACCTTTGCTCAATCAACTCTGTCAGAACCTTTGTGGATAACTTCATCGCGCTTTCTCTTCCTCTCAACATCTTAATAAACAATGCCGGGGTCATGTTCTGCCCTTTTCAGAAAACAGAAGATGGCATTGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTTCTCTTGACCAATCTTCTTCTTGACAAGATGAAACAAACAGCAAAAGAAACTGGGATAGAAGGCAGGATCATAAATCTGTCATCAATTGCTCACGTCTACACTTACGAAGAAGGGATTCGCTTTGATAACATCAATGAAGAAGATGGATACTCTGACAAGAAGGCATATGGACAGTCAAAGTTAGCCAACATATTACACGCAAAAGAGCTTTCTCGTCGCTTACAGGAAGAGGGTGCTAATATCACGGCCAACGCTGTCCACCCAGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTCATGAATTTTCTGAAGATGTTTACCTTCTTCATATGGAAGAACATTCCGCAGGGAGCAGCCACAACGTGCTTCGTTGCTTTACACCCAAGCTTGAAAGGGGTATCTGGGAAATACTTTCTGGATTGTAATGAGTATGAGCCAAGTGCACAAGCCTCAAACGAACTCTTAGGAAGAAAGCTCTGGGATTTCAGCAACAAATTGATCAACTCACTTTCAAAAGCTTAA 972 0.4403 MVGIISLVTGRPGPSGFGSASTAEQVTQGIDASNLTAIITGGASGIGLETARVLALRKVHVIIGARNMESAKEAKQVILHENESARVDILKLDLCSINSVRTFVDNFIALSLPLNILINNAGVMFCPFQKTEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKETGIEGRIINLSSIAHVYTYEEGIRFDNINEEDGYSDKKAYGQSKLANILHAKELSRRLQEEGANITANAVHPGVIMTPLMRHSSLLMNFLKMFTFFIWKNIPQGAATTCFVALHPSLKGVSGKYFLDCNEYEPSAQASNELLGRKLWDFSNKLINSLSKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01149 323 PANTHER RETINOL DEHYDROGENASE 14 317 - -
Viun7g01149 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Viun7g01149 323 Gene3D - 25 320 - -
Viun7g01149 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Viun7g01149 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Viun7g01149 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Viun7g01149 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Viun7g01149 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Viun7g01149 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Viun7g01149 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Viun7g01149 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Viun7g01149 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Viun7g01149 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01149 Viun-Chr7 12901635 12906514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01149 35 242 Miscellaneous Gene Families AT2G29340 29.224 6.75e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01149 - K11153 gmx:100807056 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01149 7 12901635 12906514 Viun7g01149 7 12901635 12906514 ECH
Viun1g02253 1 33474179 33477977 Viun7g01149 7 12901635 12906514 PCT