Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02253 ATGGTGGGTGTTATTTCGTTGGTAACAGGGATGGTTGGTCCAAGTGGATTTGGATCAGCTTCCACTGCAGAACAAGTTACTGAAGGAATCGATGGTGCCAACCTCACTGCGATTATCACAGGAGGAGCAAGTGGAATTGGGTTGGAGACAACACGAGTGTTGGCACTTCGAAAGGTTCATGTGATCATTGCAGTGAGAAACATGGTATCTGCAAAAGAAGCTAAACAACGTATACTAGAAGAGAATGAGTCTGCACGAGTCGACATAATGAAGCTCGATCTGTGCTCACTCACTTCTGTGACATCCTTTGTCGACAACTTCATAGCTCTTGATCTTCCTCTCAATATCTTGATAAACAATGCTGGAGTAATGTTCTGTCCCTTCAAACTCTCAGAGGATGGGATCGAGATGCAGTTTGCAACAAACCATCTTGGTCATTTCCTGTTGACAAACCTGCTTCTTGAGAAAATGAAACAAACTGCACAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAACTACACTTACATAAAGGGGATTAGATTCAATAAGATCAATGAGCGAAAAGGTTATGGTAACAAGAAGGCTTATGGACAGTCCAAGTTAGCAAACATACTGCATACAAATGAGCTTTCTCATCGCCTTCAGGAAGAGGGTGTGAACATCACAGCAAACTCAGTTCATCCAGGAGTAATAATGACACCTCTTATGAGACATTCTTCTTACCTTATGCACTTCTTGAAGATCTTCACCTTTTACATATGGAAGAACGTTCCTCAGGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAACGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCTATGCAAGCCAAGTGCGCATGCCAAAAACAAACATCTAGCAAAGAAACTCTGGGATTTCAGCAACGAGTTGATCAAATCGATTTTAAGAGTTTGA 972 0.4249 MVGVISLVTGMVGPSGFGSASTAEQVTEGIDGANLTAIITGGASGIGLETTRVLALRKVHVIIAVRNMVSAKEAKQRILEENESARVDIMKLDLCSLTSVTSFVDNFIALDLPLNILINNAGVMFCPFKLSEDGIEMQFATNHLGHFLLTNLLLEKMKQTAQATGIEGRIINLSSIAHNYTYIKGIRFNKINERKGYGNKKAYGQSKLANILHTNELSHRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKIFTFYIWKNVPQGAATTCYVALHPNVKGVTGKYFVDCNLCKPSAHAKNKHLAKKLWDFSNELIKSILRV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02253 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Viun1g02253 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Viun1g02253 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Viun1g02253 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Viun1g02253 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Viun1g02253 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Viun1g02253 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Viun1g02253 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Viun1g02253 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 296 IPR036291 -
Viun1g02253 323 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Viun1g02253 323 Pfam short chain dehydrogenase 36 184 IPR002347 -
Viun1g02253 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Viun1g02253 323 Gene3D - 30 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02253 Viun-Chr1 33474179 33477977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02253 35 244 Miscellaneous Gene Families AT2G29340 28.241 5.96e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02253 K11153 - gmx:100781156 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02253 1 33474179 33477977 Viun1g02253 1 33474179 33477977 ECH
Viun1g02253 1 33474179 33477977 Viun7g01149 7 12901635 12906514 PCT