Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00967 ATGTACTATGCTGTTCTTCCCGTTCCTATGGAGTTCGCAAAGACTATGTTCTGTTCGTCTCCGCCGTTTCCTCCAAGAACTCACCCTTGGAACACTCACTCCCCGTCTTCTTCTACTTCCGTTTTGATGCTTCGCGAACAAGGTTCCTCTACAGTTGCCTCTTGGTCTTCTAATTTTTCAGCACAGAATTTCCCTGCCTCAGTTCTTTTACAAGAGCAGCGAGATGAATATAGGCCTCTTCTTCACATGTCTAAGGAAGACAAAACATCTCAGGCAATTTTAAATACAAGGCAGATGGATATGGACACGGTTCATGAAGAGAATGACATTGGAAATGCTGATCAGGTAGTGCTGGACTTTAGGAAGCACCTGCATCTCTGGCCTCGTTTACGGAACTTATTAACTTCCTCCCAAACAGGAGAAATTGCTGCTTCTTCAACTTTACAGCATGTTTCTGTTGACTCGGAGAGGCGCACAGATAGTGTGCAATGTAATGGAGTTTCTTCTGCTAAGAAAGCTTTGTCTACTGCAAAACAAGCATCCTCAGTTGAAGGCCTGAAATCAACTAAAGCTGATGATAATTCCATTCCTTTTGGTCTGGCTTCTACTAGTTTGGCGGAGCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGGCTTTTAGAGAGACGAGCAAAACAAAGAAAAGTACCTAAGTCCGTAGTTAAAGATGATGAAACCCACCTTACAAGAAAGGATGTTTCTCAAGAAAGGGTACGCAAAGAAAAGAACATAAATGAAGAATTTGATCAAAATGATACCTTACGCATGTTCTTGAGGGGTCCTGAAACAAAACAACTTTTGACACTTGAACAAGAATCTGAACTGATTTCTCAGATACAGGACTTATTGAAATTGGAAGAATTGAAGAGCAGACTCCAATCTCAATTTGGTAGGGAACCAACTATGGCTGAATGGGCTGAGGGTGCGGGACTTAACTCTCGAAAGCTCCACGCACAGCTTCATCATGGAAACAAAAGCAGAGAAAAGTTGATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGTAGTATGGGCCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGCCGGTTCCCGATTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAAGCGGTGTTTAGACATTCCAGGACAATCCGTCTGCCGGAGAAGGTATATATCCAATTGGGCAAGGTAATGGAAGCAAAGAAATTGTACATTCAGGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGAAAAGGTTGACAAATTACTATATTCTGCAAGAACTCCAATTTCTATGCAGAAAACTGTGTGGGCTGACCAAGATACAACTTTCCAGGAGATTACTGCAGATCCCACAGTTGAGGCCACAGACTTGAGTGTTGAAAAACAGCTTATGAGGCGACATGTGCTCAATGTCCTAACTATCTTGCGCCCCAAAGAAAGGAAAATAATCCGACTAAGATATGGTTTTGAAGATGGTGAACAGAAATCTTTATCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATCCGAGCATTATATAAGCTTAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTTTATAA 1746 0.4152 MYYAVLPVPMEFAKTMFCSSPPFPPRTHPWNTHSPSSSTSVLMLREQGSSTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQAILNTRQMDMDTVHEENDIGNADQVVLDFRKHLHLWPRLRNLLTSSQTGEIAASSTLQHVSVDSERRTDSVQCNGVSSAKKALSTAKQASSVEGLKSTKADDNSIPFGLASTSLAEPSIGRNKTVRSTRLLERRAKQRKVPKSVVKDDETHLTRKDVSQERVRKEKNINEEFDQNDTLRMFLRGPETKQLLTLEQESELISQIQDLLKLEELKSRLQSQFGREPTMAEWAEGAGLNSRKLHAQLHHGNKSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYIQLGKVMEAKKLYIQEGNLHPTKEELARRVGITVEKVDKLLYSARTPISMQKTVWADQDTTFQEITADPTVEATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00967 581 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 265 415 IPR013325 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 ProSitePatterns Sigma-70 factors family signature 1. 369 382 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 Pfam Sigma-70, region 4 514 566 IPR007630 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 Gene3D - 500 580 IPR036388 -
Viun7g00967 581 PRINTS Major sigma-70 factor signature 538 553 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 PRINTS Major sigma-70 factor signature 369 382 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 PRINTS Major sigma-70 factor signature 553 564 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 PRINTS Major sigma-70 factor signature 393 401 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 PRINTS Major sigma-70 factor signature 517 529 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 Gene3D - 418 495 IPR036388 -
Viun7g00967 581 NCBIfam sigma-70 family RNA polymerase sigma factor 341 568 IPR014284 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 165 577 - -
Viun7g00967 581 Pfam Sigma-70 region 2 345 414 IPR007627 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 418 491 IPR013324 -
Viun7g00967 581 PIRSF Sigma_factor_SigC 10 581 IPR016262 -
Viun7g00967 581 Pfam Sigma-70 region 3 426 494 IPR007624 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 478 577 IPR013324 -
Viun7g00967 581 ProSitePatterns Sigma-70 factors family signature 2. 538 564 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun7g00967 581 Gene3D - 262 414 - -
Viun7g00967 581 CDD Sigma70_r4 507 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00967 Viun-Chr7 9725268 9730982 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00967 - - vum:124824753 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00967 7 9725268 9730982 Viun7g00967 7 9725268 9730982 ECH
Viun1g02384 1 34304281 34309686 Viun7g00967 7 9725268 9730982 PCT