Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02384 ATGTTCTCTTCCTCTCCACCGTTTCCTTCATCTTCTTCGTCTTCCGTTATGATGCTTCATGAACAAGCTGCTCCAGCAGTTGCATCCTGGTCCTCTAGTTCTACAGCTCGGCATTTTCCTACCTCTGTTCTTTTACAAGAACAGCGTGAGGAGTATAGGCCCTTACTGCACGCGTATAATAAGGAGGCAACGTTAAATACAAGGCAGATGGATATGTCCTCAGTTCAAGAGAAATGCAACACAGGAAATCCTGATCAGTTGGTGCATGATTTTGTTCACCAGTTGCATCTCCGGTCTCATTTACAGAACTTGGAACTTGCTGCTTCTTTGACTCTTCAGCCTGTGGATAACGACTCAGAGAGGCCTGCAGATGGTCTGCCAAGTAATGCGGTTTCTCTTGCTCAGCAAGCTTTGTCAGCCTCAAAGCAAGCAGCTTCATCAGTTGAAGTTGATGATGATGATGATCCACTTTCTTTTGGTTTGGCCTCCACAAGTTTGGTTGACTCTTCACCGAAAAGGAATAAAATTGTGAGGTCAACACGGATTATAGAAAGACGATCTAAACAGAGAAAAGCATCAAAGTCAATACTCCTTGATGAAGAAAGTTACCTTGACAGAAAATCTTATGTACAGAGAAAGTTACGTTTAGAAAAGAAATTAAATGAAGGATTTGATCAAAATGACCCCCTGCGCATGTTCTTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTGAATTGATTACTCAGCTTCAGGATTTCTCAAGATTGGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGACGGGAACCAACTTTAGCTGAATGGGCTGATGTCTTGGGCCTTAGTTGTTGTGCCCTGCAGACACAGCTTCATTGTGTTAAGAGAAGCAAAGAAAAGCTGTTTCATGCCAATATGCGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTACGGGTCTTATGAAGAGCATTGACAAATTTAAACCAGGAGCTGGTTGCCGATTTGGTACTTACGCATACTGGTGGATAAGGCATTCGATAAGGAAGGCAATATTTCTGCATTCCAGGACTATCCGTATACCGGAGAATTTATATAGACTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATTCATTCAGGAGGGAAACATTCACCCATCCAAAGAAGAATTAGCAAGAAGGGTGGGAATTACAATAGACAAGTTGGAAACTTTACTATTTGCTTCAAGACATCCAATTTCCATGCAGCAAACTGTGTGGGCGGACCAAGAGACAACTTTCCAGGAGATTACCGCAGACTCAGCAATTGAGATCCCAGATGTGTGTGTTTCAAAACAGCTAATGAGAAGGCATGTGCACAACCTCTTAAATATCTTAAGCCCTAAAGAAAAGAGCATAATCAGGCTAAGATTTGGTATTGAAGATGGCAAGGAAAAAACATTGCAAGATATAGGCAAGGTATTTGGTTTGACCAAGGAAAGGGTCCGACAGTTGGAGAGCCGAGCATTGTCCAAGCTCAAGGAGTGTCTTGAAAGTCAAGGACTCGACGCATACAGTGACTTGCTTATATAG 1629 0.426 MFSSSPPFPSSSSSSVMMLHEQAAPAVASWSSSSTARHFPTSVLLQEQREEYRPLLHAYNKEATLNTRQMDMSSVQEKCNTGNPDQLVHDFVHQLHLRSHLQNLELAASLTLQPVDNDSERPADGLPSNAVSLAQQALSASKQAASSVEVDDDDDPLSFGLASTSLVDSSPKRNKIVRSTRIIERRSKQRKASKSILLDEESYLDRKSYVQRKLRLEKKLNEGFDQNDPLRMFLSGPESRQLLTREEESELITQLQDFSRLEEVKIRLQSQLRREPTLAEWADVLGLSCCALQTQLHCVKRSKEKLFHANMRMVVHIAKHYQGRGLSLQDLLQEGSTGLMKSIDKFKPGAGCRFGTYAYWWIRHSIRKAIFLHSRTIRIPENLYRLLGKVIEAKKSFIQEGNIHPSKEELARRVGITIDKLETLLFASRHPISMQQTVWADQETTFQEITADSAIEIPDVCVSKQLMRRHVHNLLNILSPKEKSIIRLRFGIEDGKEKTLQDIGKVFGLTKERVRQLESRALSKLKECLESQGLDAYSDLLI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02384 542 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 129 538 - -
Viun1g02384 542 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 226 376 IPR013325 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 Gene3D - 379 456 IPR036388 -
Viun1g02384 542 CDD Sigma70_r4 468 526 - -
Viun1g02384 542 PRINTS Major sigma-70 factor signature 330 343 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 PRINTS Major sigma-70 factor signature 354 362 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 PRINTS Major sigma-70 factor signature 478 490 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 PRINTS Major sigma-70 factor signature 514 525 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 PRINTS Major sigma-70 factor signature 499 514 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 439 537 IPR013324 -
Viun1g02384 542 Pfam Sigma-70 region 2 306 370 IPR007627 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 Pfam Sigma-70 region 3 386 458 IPR007624 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 Gene3D - 462 541 IPR036388 -
Viun1g02384 542 ProSitePatterns Sigma-70 factors family signature 2. 499 525 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 NCBIfam sigma-70 family RNA polymerase sigma factor 304 529 IPR014284 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 Pfam Sigma-70, region 4 474 527 IPR007630 GO:0003700|GO:0006352|GO:0006355
Viun1g02384 542 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 379 452 IPR013324 -
Viun1g02384 542 Gene3D - 223 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02384 Viun-Chr1 34304281 34309686 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02384 - - gmx:100815699 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02384 1 34304281 34309686 Viun1g02384 1 34304281 34309686 ECH
Viun1g02384 1 34304281 34309686 Viun7g00967 7 9725268 9730982 PCT