Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03044 ATGGCTTCTTTCAATCTCTCTTATTCTTCCTCACCAGCTCTCTCATGTCCCCGGGCAAGCAAACACTTCAAATTGCTCAATGATGTGCCTTTTGTCCGAATGAGTTCTAAATTTCCCTCAAGCGATAATGCTGTTAGTAGAATTAAAGCTACGTTGATCTCTGGAGGAGGAGACCTACTTTCCTATCCAAAGAGCAATGACATTGCGATAGGCAAAAATCTGGTTGGAGATGAATCTGTTCGAATTGGTGTACAATATAATGGAACACCAGCTGTAGACACGGGGATAACAAGCAATGTTTTCTCTGTTGATGGTGATGAATTCGATCTAGACAGCCCAACAGCAGGTTTTGCTTCCATCCCTGAGGCCATTGAAGACATTCGCCAGGGAAAGATGGTAGTGGTCGTGGACGACGAAGATCGAGAAAATGAAGGAGACTTGATAATGGCAGCACAGTTGGCAACACCCGAGGCAATGGCCTTTATTGTAAAGCATGGAACTGGCATAGTTTGTGTAAGCATGAAGGAGGAAGATTTGGATAGATTGGAACTTCCTTTGATGGTAAACAGTAAGGATAACGATGAGAAGCTTCGTACGGCATTCACTGTGACAGTGGATGCCAAACATGGTACCACCACCGGTGTGTCTGCTCAAGATAGGGCAACAACAGTCTTAGCCCTTGCATCCAGAGATTCTACCCCAGGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGGGAAGGTGGTGTCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTACTGTACTTGCTGGCATGGATCCAGTGGCAGTTCTGTGTGAGATTGTAGATGACGATGGGTCCATGGCTAGACTGCCAAAACTTCGCCAGTTCGCAGAGCGTGAAAATTTGAAAGTTGTATCTATTGCTGACTTAATAAGATATAGAAGAAAAAGGGATAAACTGGTGGATCGCGCTTCTGCTGCACGGATACCTACAATGTGGGGACCATTCACAGCTTACTGTTACAGGTCCCTTTTGGACGGAATTGAGCATATTGCAATGGTTAAGGGAGAGATTGGAGATGGACAAGATGTCCTTGTGAGGGTACACTCTGAGTGTTTAACCGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTGCACTCTCAATGCAACAGATCGAGGCTGCTGGTAGGGGTGTGCTGGTATATCTCCGAGGACACGAAGGACGGGGCATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAAGATGATGGACGCGATACAGTGGAAGCCAATGAAGAGTTAGGATTGCCTGTTGACTCCAGGGAATACGGCATTGGCGCTCAGATATTAAGGGACTTGGGTGTTAGATCTATGAAGCTGATGACCAACAATCCAGCAAAATATGTTGGGCTCAAAGGTTATGGTTTGACGGTTTCGGGTAGGATCCCAATATTAACACTCATTACTTCAGAGAACAAGAGATATTTAGAGACCAAACGTATGAAAATGGGTCACGTATATGGCATGGAAATTGAAGGCCAACTCAGTACCCATGACAATGGTAATGGTAGTGCCAGTTAA 1602 0.4526 MASFNLSYSSSPALSCPRASKHFKLLNDVPFVRMSSKFPSSDNAVSRIKATLISGGGDLLSYPKSNDIAIGKNLVGDESVRIGVQYNGTPAVDTGITSNVFSVDGDEFDLDSPTAGFASIPEAIEDIRQGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLDRLELPLMVNSKDNDEKLRTAFTVTVDAKHGTTTGVSAQDRATTVLALASRDSTPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGMDPVAVLCEIVDDDGSMARLPKLRQFAERENLKVVSIADLIRYRRKRDKLVDRASAARIPTMWGPFTAYCYRSLLDGIEHIAMVKGEIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALSMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTVSGRIPILTLITSENKRYLETKRMKMGHVYGMEIEGQLSTHDNGNGSAS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03044 533 CDD GTP_cyclohydro2 321 512 IPR000926 GO:0003935|GO:0009231
Viun6g03044 533 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 118 315 IPR000422 GO:0008686|GO:0009231
Viun6g03044 533 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 122 314 IPR000422 GO:0008686|GO:0009231
Viun6g03044 533 Hamap GTP cyclohydrolase-2 [ribA]. 320 516 IPR000926 GO:0003935|GO:0009231
Viun6g03044 533 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 108 321 - -
Viun6g03044 533 FunFam Riboflavin biosynthesis protein RibBA 322 493 - -
Viun6g03044 533 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 116 512 IPR016299 GO:0009231
Viun6g03044 533 Gene3D DHBP synthase 106 321 - -
Viun6g03044 533 SUPERFAMILY RibA-like 320 491 IPR036144 -
Viun6g03044 533 Gene3D GTP cyclohydrolase II 322 493 IPR036144 -
Viun6g03044 533 PANTHER GTP CYCLOHYDROLASE II-RELATED 116 515 - -
Viun6g03044 533 Pfam GTP cyclohydrolase II 326 490 IPR032677 -
Viun6g03044 533 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 115 319 IPR000422 GO:0008686|GO:0009231
Viun6g03044 533 SUPERFAMILY YrdC/RibB 116 318 IPR017945 -
Viun6g03044 533 NCBIfam GTP cyclohydrolase II 325 513 IPR000926 GO:0003935|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03044 Viun-Chr6 33075254 33079306 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03044 K14652 - gmx:100801046 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01723 3 12443661 12448644 Viun6g03044 6 33075254 33079306 PCT