Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02267 ATGGGAAGCATGTCAAATGTGATTGTCTTCTGTTTCTGTCTGTGGACCCTCTTGTTTTCTCTGGCGTCGTCTGCACCCAACGATGGGTTGCGCCGGATTGGGCTGAAAAAGATCAGATTGGACGACGATGACGTTATTCGATTTAAGGAATTGCGGTCTTCAGCCACAGAGAATGTTCTTCAGAACATTCTTCACGGCGCTGACGGCGCCGATATTGTTGCGTTGAAGAACTACATGGATGCTCAGTACTATGGTGAAATAGCCATTGGTACCCCTCCTCAGACGTTCACTGTGATTTTTGACACCGGTAGCTCTAATCTGTGGGTGCCGTCTTCTAAATGTTACCTCTCGCTTGCATGTTACACGCATGCTAAGTACAAGTCCAGCAAATCCAGAACCTACAAAGAAAATGGGACTTCTGCTGCAATTCAATACGGTAGTGGAAGTATTTCTGGTTTCTTTAGCAATGACAATGTCAGAGTTGGAGACGTAGTTGTAGACAACCAGGCATTTATCGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCAGCTAAGTTTGATGGTATACTAGGACTTGGATTTCAAGAGATCTCAGTAGGAAATGCTGTTCCAGTGTGGTACAATATGGTTGAACGAGGTCTTGTAAAGGATCCAGTATTTTCATTTTGGTTAAATCGTAAACCAGAAGAAGAGAATGGGGGTGAGATTGTTTTTGGTGGTGCTGATCCTGCTCACTACAGGGGCAAACATACTTATGTGCCAGTGACAAGAAAAGGATATTGGCAGTTTGACATGGGAGAGGTGCTTATTGCCGGTAAACCCACTGGGTTCTGTGCTAGTGACTGTTCTGCAATTGCGGACTCTGGAACTTCTTTGTTGGCTGGTCCAACGCCTATAATTACCGAGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGCAAAGAGTGCAAGTCTGTTGTCGAACAGTATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAGAAAAGCCTAAAAAGATCTGCTCACAAATTGGATTGTGTTCCTTTGATGGGACTCGTGCTGTTAGCATGGGCATTGAGAGTGTGGTGGATAAGAACGAAAGAGAATCATCTGGTGCCATTCGGGATGCTCGTTGTTCAACATGTGAGATGGCTGTTATTTGGATTCAAAACCAGCTGAGGCAGAACCAGACAGAAGAACAGATAATAAATTATGTCAATGGGCTTTGTGATAAGTTGCCCAGCCCAATGGGACAATCATCCGTTGATTGTGGACAAATCTCTTCAATGCCTATTGTTTCCTTTACGATTGGTGGAAAAGTTTTTGACCTTTCCCCAAATGAGTATATACTGAAGGTGGGAGAAGGTCCTCAAGCCCAGTGCATCAGTGGCTTCATTGCTTTGGATGTGCCTCCTCCTCGTGGCCCTCTATGGATCCTTGGAGATATCTTCATGGGACCCTATCACACCATCTTTGATTATGGTCAGCAGAGAGTCGGATTTGCTGAAGCAGCATAG 1524 0.4469 MGSMSNVIVFCFCLWTLLFSLASSAPNDGLRRIGLKKIRLDDDDVIRFKELRSSATENVLQNILHGADGADIVALKNYMDAQYYGEIAIGTPPQTFTVIFDTGSSNLWVPSSKCYLSLACYTHAKYKSSKSRTYKENGTSAAIQYGSGSISGFFSNDNVRVGDVVVDNQAFIEATREPGVTFVAAKFDGILGLGFQEISVGNAVPVWYNMVERGLVKDPVFSFWLNRKPEEENGGEIVFGGADPAHYRGKHTYVPVTRKGYWQFDMGEVLIAGKPTGFCASDCSAIADSGTSLLAGPTPIITEINQAIGASGVVSKECKSVVEQYGQTILELLLAEEKPKKICSQIGLCSFDGTRAVSMGIESVVDKNERESSGAIRDARCSTCEMAVIWIQNQLRQNQTEEQIINYVNGLCDKLPSPMGQSSVDCGQISSMPIVSFTIGGKVFDLSPNEYILKVGEGPQAQCISGFIALDVPPPRGPLWILGDIFMGPYHTIFDYGQQRVGFAEAA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02267 507 FunFam Aspartic proteinase A1 313 416 - -
Viun6g02267 507 SUPERFAMILY Acid proteases 49 506 IPR021109 -
Viun6g02267 507 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190|GO:0006508
Viun6g02267 507 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Viun6g02267 507 PRINTS Pepsin (A1) aspartic protease family signature 285 296 IPR001461 GO:0004190|GO:0006508
Viun6g02267 507 PRINTS Pepsin (A1) aspartic protease family signature 235 248 IPR001461 GO:0004190|GO:0006508
Viun6g02267 507 Pfam Saposin-like type B, region 2 316 349 IPR008138 -
Viun6g02267 507 SUPERFAMILY Saposin 314 416 IPR011001 -
Viun6g02267 507 Gene3D - 313 416 - -
Viun6g02267 507 ProSiteProfiles Peptidase family A1 domain profile. 83 504 IPR033121 -
Viun6g02267 507 Gene3D Acid Proteases 31 241 IPR021109 -
Viun6g02267 507 CDD phytepsin 73 505 IPR033869 GO:0004190
Viun6g02267 507 ProSiteProfiles Saposin B type domain profile. 377 418 IPR008139 -
Viun6g02267 507 FunFam Lysosomal aspartic protease 69 311 - -
Viun6g02267 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Viun6g02267 507 Pfam Eukaryotic aspartyl protease 82 506 IPR033121 -
Viun6g02267 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 285 296 IPR001969 GO:0004190|GO:0006508
Viun6g02267 507 ProSiteProfiles Saposin B type domain profile. 313 353 IPR008139 -
Viun6g02267 507 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 20 505 IPR001461 GO:0004190|GO:0006508
Viun6g02267 507 Pfam Saposin-like type B, region 1 381 416 IPR007856 GO:0006629
Viun6g02267 507 Gene3D Acid Proteases 243 507 IPR021109 -
Viun6g02267 507 FunFam Vacuolar aspartic proteinase 382 506 - -
Viun6g02267 507 SMART sapb_4 277 349 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02267 Viun-Chr6 28247245 28251899 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02267 K08245 - gmx:100801598 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02267 6 28247245 28251899 Viun6g02267 6 28247245 28251899 ECH
Viun3g06111 3 64667838 64673163 Viun6g02267 6 28247245 28251899 PCT