Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06111 ATGGGGAACAACAAGAATGTGATCTCGTTGTGCTTGTTTGTGACAACCCTGTTGTTTTCTGCTGTGTCTTGTGCACCCAATGATGGGCTGCGTAGGATTGGGCTCAAGAAGATTAAATTGGACCCTAACAACAGGCTTGCTGCTCGAATTGGGTCCAACGATGATTCTTTCCGGGCTTCTATTAGAAAGTTTCATCTTCAAAACAACTTTGCTGGCACTGGGGAAACCGATATTGTTGCCTTAAAGAATTACTTGGATGCTCAGTATTATGGTGAAATATCCATTGGAACATCTCCTCAGAAGTTCACTGTCATTTTCGACACAGGCAGCTCTAATTTGTGGGTGCCATCATCCAGATGCACCTTTTCGCTTGCATGCTACTTCCATGCTAAGTACAGGTCCGGCAGATCAAGTACTTACAGGAGAAATGGAACTGCTGCTGCTATTCAATATGGTACCGGAGCAATTGCTGGTTTCTTTAGCTATGACAATGTTAGAGTTGGTGACATAGTTGTAAAGAACCAGGAATTTATCGAAGCAACTAGGGAGCCAGGTGTTGTATTTTTGGCAGCCAAGTTTGATGGCATACTGGGACTTGGATTTCAAGAGATATCTGTTGGAAATGCTGTTCCAGTGTGGTACAACATGGTTGAACAAGGTCTTATTAAGGAACCAGTATTTTCATTTTGGTTAAACCGCAAAACAGAGGAAGAGGAAGGGGGTGAGCTTGTTTTTGGAGGTGTTGACCCTGCTCACTATAAGGGAGAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGTTTGATATGGGAGATGTACTTATTGGTGGTAAACCCACTGGATATTGTGCTGGTGGGTGTGCAGCCATTGCAGACTCAGGGACTTCGTTATTGGCTGGTCCAACGGCTATAATAACTATGATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACCGTCGTTGCAGAGTATGGTCAAACAATATTGAATTTGCTTTTGGCTGAAACACAGCCGAAGAAGATCTGTTCTCAAATTGGATTGTGCACCTTTGATGGGACTCGTGGTGTTGATATGGGCATAGAGAGCGTTGTGGATGAGAATGCAAGAAAATCATCTGGTGGTCTTCATGATGCTGGTTGTTCTGCGTGTGAGATGGCGGTTGTTTGGGTGCAGAACCAGCTCAGCCGAAATCAGACACAGGATCAGATACTAAGCTACGTCAATCAACTTTGCGATAAAATGCCAAGCCCGATGGGAGAATCTTCTGTTGGCTGCGGGGATATCTCTTCATTACCTGTAGTGTCCTTTACTATTGGTGGAAGAACTTTTGACCTTCGCCCAGAGGAGTACATACTCAAAGTGGGTGAAGGCCCTGTGGCTCAGTGCATTAGTGGCTTTACTGCTATAGATATTGCACCTCCTCGTGGCCCTCTCTGGATCCTTGGGGACGTCTTCATGGGGCCATATCATACAGTATTTGATTTTGGTAATCAAAGAGTGGGATTTGCTGAAGCAGCGTAA 1542 0.4475 MGNNKNVISLCLFVTTLLFSAVSCAPNDGLRRIGLKKIKLDPNNRLAARIGSNDDSFRASIRKFHLQNNFAGTGETDIVALKNYLDAQYYGEISIGTSPQKFTVIFDTGSSNLWVPSSRCTFSLACYFHAKYRSGRSSTYRRNGTAAAIQYGTGAIAGFFSYDNVRVGDIVVKNQEFIEATREPGVVFLAAKFDGILGLGFQEISVGNAVPVWYNMVEQGLIKEPVFSFWLNRKTEEEEGGELVFGGVDPAHYKGEHTYVPVTRKGYWQFDMGDVLIGGKPTGYCAGGCAAIADSGTSLLAGPTAIITMINHAIGASGVMSQECKTVVAEYGQTILNLLLAETQPKKICSQIGLCTFDGTRGVDMGIESVVDENARKSSGGLHDAGCSACEMAVVWVQNQLSRNQTQDQILSYVNQLCDKMPSPMGESSVGCGDISSLPVVSFTIGGRTFDLRPEEYILKVGEGPVAQCISGFTAIDIAPPRGPLWILGDVFMGPYHTVFDFGNQRVGFAEAA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06111 513 Gene3D Acid Proteases 248 513 IPR021109 -
Viun3g06111 513 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Viun3g06111 513 PRINTS Pepsin (A1) aspartic protease family signature 241 254 IPR001461 GO:0004190|GO:0006508
Viun3g06111 513 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Viun3g06111 513 PRINTS Pepsin (A1) aspartic protease family signature 486 501 IPR001461 GO:0004190|GO:0006508
Viun3g06111 513 PRINTS Pepsin (A1) aspartic protease family signature 291 302 IPR001461 GO:0004190|GO:0006508
Viun3g06111 513 FunFam Lysosomal aspartic protease 360 512 - -
Viun3g06111 513 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 291 302 IPR001969 GO:0004190|GO:0006508
Viun3g06111 513 SUPERFAMILY Saposin 320 422 IPR011001 -
Viun3g06111 513 ProSiteProfiles Peptidase family A1 domain profile. 89 510 IPR033121 -
Viun3g06111 513 SUPERFAMILY Acid proteases 75 512 IPR021109 -
Viun3g06111 513 ProSiteProfiles Saposin B type domain profile. 319 359 IPR008139 -
Viun3g06111 513 FunFam Aspartic proteinase A1 319 422 - -
Viun3g06111 513 Pfam Saposin-like type B, region 2 322 355 IPR008138 -
Viun3g06111 513 Gene3D - 319 422 - -
Viun3g06111 513 FunFam Lysosomal aspartic protease 75 317 - -
Viun3g06111 513 ProSiteProfiles Saposin B type domain profile. 383 424 IPR008139 -
Viun3g06111 513 Gene3D Acid Proteases 31 247 IPR021109 -
Viun3g06111 513 Pfam Saposin-like type B, region 1 386 422 IPR007856 GO:0006629
Viun3g06111 513 CDD phytepsin 79 511 IPR033869 GO:0004190
Viun3g06111 513 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 21 511 IPR001461 GO:0004190|GO:0006508
Viun3g06111 513 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Viun3g06111 513 Pfam Eukaryotic aspartyl protease 88 512 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06111 Viun-Chr3 64667838 64673163 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06111 K08245 - gmx:100779619 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06111 3 64667838 64673163 Viun6g02267 6 28247245 28251899 PCT