Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02224 ATGAAGACCGGGTCGGGTTCCAAAGAGTATCAGGAGTGGTTCAATTTGGCTGATTCAGACGGAGATGGACGAATCTCTGGAAGCGAGGCCACTAAGTTCTTTGCTCTCTCCAACTTGTCACGCTCGCAACTCAAACAGCTTTGGGCTCTCGCCGATGTCAAACGACAGGGGTTTTTGGGTTTCCCGGAGTTCGTTACTGCAATGCAGTTGGTTTCGCTGGCGCAAGCAGGGCAAGAACTTAACTCAGATATTCTCAAAACTCAAGTTGATAAGGAAAATATTAAACCTCCTATATTGGAAGGACTCGACGCTTTGGTAGCACAAAAGAGTTTAACAATTACTACCCCACCCGAAGTAAATGGGATTGCTCAGCCACAAGGGTTTCCAACTAATCGTTGGTTTGGTTCAAAATCTTCAAAGAAATTACCTCTCAACTCCGTTACATCAATCATTGATGGCTTGAAGAGATTATATATCGAGAGGTTAAAGCCGTTGGAAGTTACTTACCGGTATAATGATTTTGTGTCTCCATTGTTGACCAACACTGATTTTGATGCTAAACCCATGGTCATGCTTCTGGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAGATGTGATTATCCAGGAGCACATGTTGGACCAGAGCCTACCACTGATAGATTTGTTGTTGTCATGTCTGGACCTGATGAGAGGAGTATTCCTGGAAATACCATCGCTGTTGATGCTGACATGCCTTTCAGCGGCTTGACAACATTTGGAGGTTCTTTTTTATCAAAGTTCCAATGTTCTCAAATGCCACATCCTCTGTTGGATGAAATAACACTTGTGGACACTCCTGGAGTCTTATCTGGAGAGAAACAGAGGACTCAACGAAGCTATGATTTCACTGGTGTCGTGTCTTGGTTTGCTGCAAAATGCGACCTCATTCTTCTCCTGTTTGATCCTCATAAACTAGACATCAGTGATGAGTTTAAACGTGTAATCACATCTTTACGTGGTAATGATGACAAGATACGAGTGGTTTTGAATAAGGCTGATCAAGTTGATACTCAACAACTTATGAGAGTGTATGGAGCGTTGATGTGGTCATTGGGGAAAGTTCTAAATACACCCGAAGTTTCACGTGTATACATTGGCTCATTTAACGATAAGCCTATAGATGAAGACTTCGTAAGTCCATTAGGACGGGATCTGTTTGAGAAGGAACAAAGTGATCTGCTTGCAGATTTGCTAGATATTCCAAAGAAGTCATGCGATCGCCGGATCAACGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGCATATAATTAGCCACCTTAAGAAAGAGATGCCTGCAATAATGGGCAAAGCGAAGGCTCAACAGAGACTTATTGACAATCTTGAGGAAGAATTTGCAAAGGTCCAAAGAGAGTTTCATCTACCTGCTGGTGATTTCCCCAGTGTTGAACACTTCAGAGAAGTTTTGATTGGTTATAGCATCGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCCGTGGATGACATGCTTGGATATGAAATACCAGAGCTTTTAAAGAAATTCAGAAATCCTTATGATTAA 1608 0.4136 MKTGSGSKEYQEWFNLADSDGDGRISGSEATKFFALSNLSRSQLKQLWALADVKRQGFLGFPEFVTAMQLVSLAQAGQELNSDILKTQVDKENIKPPILEGLDALVAQKSLTITTPPEVNGIAQPQGFPTNRWFGSKSSKKLPLNSVTSIIDGLKRLYIERLKPLEVTYRYNDFVSPLLTNTDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHVGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEITLVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPIDEDFVSPLGRDLFEKEQSDLLADLLDIPKKSCDRRINEFVKRARSAKIHAHIISHLKKEMPAIMGKAKAQQRLIDNLEEEFAKVQREFHLPAGDFPSVEHFREVLIGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02224 535 CDD EH 10 76 IPR000261 GO:0005515
Viun6g02224 535 Gene3D - 154 526 - -
Viun6g02224 535 SMART eh_3 1 90 IPR000261 GO:0005515
Viun6g02224 535 ProSiteProfiles EH domain profile. 6 84 IPR000261 GO:0005515
Viun6g02224 535 Coils Coil 458 478 - -
Viun6g02224 535 Pfam N-terminal EH-domain containing protein 153 185 IPR031692 -
Viun6g02224 535 Pfam Dynamin family 190 349 IPR045063 -
Viun6g02224 535 CDD EHD 189 433 - -
Viun6g02224 535 ProSiteProfiles EF-hand calcium-binding domain profile. 42 74 IPR002048 GO:0005509
Viun6g02224 535 FunFam EH domain-containing protein 1 190 418 - -
Viun6g02224 535 Pfam Domain of unknown function (DUF5600) 425 526 IPR040990 -
Viun6g02224 535 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Viun6g02224 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 456 IPR027417 -
Viun6g02224 535 SUPERFAMILY EF-hand 7 77 IPR011992 -
Viun6g02224 535 SMART efh_1 9 37 IPR002048 GO:0005509
Viun6g02224 535 SMART efh_1 43 71 IPR002048 GO:0005509
Viun6g02224 535 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 184 419 IPR030381 GO:0005525
Viun6g02224 535 Pfam Cytoskeletal-regulatory complex EF hand 8 71 IPR000261 GO:0005515
Viun6g02224 535 PANTHER EH DOMAIN 10 532 - -
Viun6g02224 535 Gene3D - 2 99 - -
Viun6g02224 535 Gene3D - 190 418 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02224 Viun-Chr6 27971576 27975765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02224 8 535 EF-hand Containing Proteins AT4G05520 78.220 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02224 K12483 - gmx:100809091 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02224 6 27971576 27975765 Viun6g02224 6 27971576 27975765 ECH
Viun3g06084 3 64508883 64513502 Viun6g02224 6 27971576 27975765 PCT