Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06084 ATGAAAGCAGTCTCCGATTGGATCGATTCTTGTTCCAAAGAGCAATTGAAGACGTATCAAGAATGGTTCATCTTGGCCGATTCAGATGGAGACGCCCGTATCTCTGGAAATGATGCAACCAAGTTCTTTGCTCTCTCCAACTTGTCTCGCTCTCAACTCAAGCATGTTTGGGCTATCGCTGATGCTAAAAGACAGGGCTTTCTTGGTTTTCAAGAGTTTGTTATCGCAATGCAGCTCGTTGCACTGGCACAAGCAGGATACAATATCAACTCAGATATCCTTAAAGCGGAAATTGACAAGGAAAGTATTAAATCTCCAGTAATGGAAGGGCTTGATGGTTTAATAGATACAAAGAGTTTGACATTACATTCCCAACCAGAGGCATTTGGGACTGCTCAACCTCAGCCTTTGTCCCTCAATTCATGGGCTGCTCCAAAATCTGTGAAGAAATTACCTCTGAATGCAGTTACATCAATAATCGATGGTTTGAAGAGATTGTATGTGGAAAAGCTAAGGCCGTTGGAGGTCACTTATCAATTCAATGATTTTGTATCTCCATTACTGACCGACAGTGATTTTGATGCTAAACCAATGGTTATGCTTCTTGGTCAATATTCCACAGGGAAAACAACCTTCATAAAACATATGCTACGATGCGATTATCCAGGTGCACACATTGGACCAGAGCCTACAACGGACAGATTTGTGGTTGTCATGTCTGGTTCTGATGAAAGGAGTATTCCTGGAAATACAGTAGCTGTTGATGCTAGTATGCCTTTCAGTGGCCTGTCAACTTTTGGTGGTTCATTTTTGTCAAAGTTCCAGTGTTCTCAACTACCACATCCACTGCTAGATGAAATAACATTTGTGGACACTCCTGGTGTCCTCTCTGGAGAAAAACAAAGGACTCAACGAAGTTATGACTTCACTGGTGTTATATCTTGGTTTGCTGCAAAATGTGATCTGATACTTCTGCTATTTGATCCTCATAAACTTGACATTAGTGACGAATTTAAACGTGTAATTGGGTCTCTACACGGTCATGATGACAAGATTCGCGTGGTTTTGAATAAAGCGGATCAAATTGATACTCAACAACTCATGAGAGTTTATGGAGCATTGATGTGGTCTCTGGGGAAAGTTCTGAATACTCCAGAAGTTATGCGTGTATATATTGGCTCATTTAATGATAAGCCTATAACCGAAGGATTTGTTGGCCCGTTAGGACAGGAGCTCTTTGAAAAGGAACAGAATGATCTTCTTGCAGACTTGGTAGATATTCCAAGAAAGGCATGCGACAGTCGGATCAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGTATATAATTAGTCATCTTAGGAATGAGATGCCAGCAATGATGGGCAAAGCTAAGACTCAACAAAGGCTTATAGAGAATCTTGAAGACGAATTTAGAAAGGTTCAAAGGGAGTTTCATCTACCAGCTGGTGATTTTCCCGATGTAGAACACTTCAGAGAGATTTTGAGTGGCTACAGCATTGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCGGTTGATGACATGCTTGGATACGAAATACCAGAGTTATTAAAAAAGTTCAGAAATCCTTATGATTGA 1635 0.4043 MKAVSDWIDSCSKEQLKTYQEWFILADSDGDARISGNDATKFFALSNLSRSQLKHVWAIADAKRQGFLGFQEFVIAMQLVALAQAGYNINSDILKAEIDKESIKSPVMEGLDGLIDTKSLTLHSQPEAFGTAQPQPLSLNSWAAPKSVKKLPLNAVTSIIDGLKRLYVEKLRPLEVTYQFNDFVSPLLTDSDFDAKPMVMLLGQYSTGKTTFIKHMLRCDYPGAHIGPEPTTDRFVVVMSGSDERSIPGNTVAVDASMPFSGLSTFGGSFLSKFQCSQLPHPLLDEITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIGSLHGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKPITEGFVGPLGQELFEKEQNDLLADLVDIPRKACDSRINEFVKRARSAKIHAYIISHLRNEMPAMMGKAKTQQRLIENLEDEFRKVQREFHLPAGDFPDVEHFREILSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06084 544 Coils Coil 467 487 - -
Viun3g06084 544 SMART eh_3 8 104 IPR000261 GO:0005515
Viun3g06084 544 Pfam Cytoskeletal-regulatory complex EF hand 15 80 IPR000261 GO:0005515
Viun3g06084 544 CDD EH 19 85 IPR000261 GO:0005515
Viun3g06084 544 Pfam Domain of unknown function (DUF5600) 435 535 IPR040990 -
Viun3g06084 544 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 193 428 IPR030381 GO:0005525
Viun3g06084 544 Gene3D - 163 535 - -
Viun3g06084 544 ProSiteProfiles EH domain profile. 15 86 IPR000261 GO:0005515
Viun3g06084 544 SUPERFAMILY EF-hand 12 87 IPR011992 -
Viun3g06084 544 CDD EHD 198 442 - -
Viun3g06084 544 Gene3D - 10 105 - -
Viun3g06084 544 Gene3D - 199 427 IPR027417 -
Viun3g06084 544 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Viun3g06084 544 Pfam Dynamin family 199 358 IPR045063 -
Viun3g06084 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 467 IPR027417 -
Viun3g06084 544 Pfam N-terminal EH-domain containing protein 162 194 IPR031692 -
Viun3g06084 544 PANTHER EH DOMAIN 19 541 - -
Viun3g06084 544 FunFam EH domain-containing protein 1 199 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06084 Viun-Chr3 64508883 64513502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06084 8 544 EF-hand Containing Proteins AT4G05520 75.233 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06084 K12483 - gmx:100803757 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06084 3 64508883 64513502 Viun6g02224 6 27971576 27975765 PCT