Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02141 ATGGGCCTTGTTGTTTCTGAGGATGCCCTCAAGAAGCTCCAAGCTCTCATGGATCAAGTTGAGGAGGAGCCACTGCTGAGAACTTTTCAGAATGTTCATCAAGGATGTGTCACGGAAACCTTAATTCGATTCCTAAAAGCTAGGGAGTGGAACGTTACCAAGGCACATAAAATGATAATCGATTGTTTAAATTGGAGAGTGCAAAATGAGATTGACAACATATTATCGAAACCCATAATTCCTACTGATTTATACCGAGGCATTCGTGATTCACAACTTGTAGGTTTGTCAGGTTACTCAAGAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGGCTTAGCACATTTGACAAAGCATCAGTCCATTATTATGTGCAGTCTCATATTCAAATTAACGAATATCGTGATCGTGTAATATTGCCTTCTGCATCAAAGAAGCATGGGAAGCCTATTACCACATGTATAAAAGTTTTGGATATGACTGGTCTGAAGTTATCAGCCCTGAATCAGATCAAGTTGTTAACAATAATATCATCCATCGATGATCTGAACTACCCTGAGAAAACAAATACTTATTACATTGTAAATGCCCCATACATATTTTCAGCCTGTTGGAAGGTTGTGAAGCCACTTCTGCAAGAGAGAACAAGAAGAAAAGTTCAAGTCTTGCCGGGTTGTGGACGAGATGAACTGTTGAAGATCATGGATTGTGCATCGCTGCCACATTTCTGTAAAAGAGAAGGCTCTGGATCATCCAGACATTCAGATAATGGAAGTGGAAATGAAAATTGCTATTCCTTTGATCATCCTTTCCATCAGAAGCTCTACAATCACATAAAGGAACAATCCAGAATCCATGAAGTTGTTGAACCAATCAAGCAGGGATCATTCCATGTAGATTTTCCTGAACCTCCTGCTGAGAAAGCTGAGATTGTCAAGACTTTAGAGTCTGAGCTACACAAGTTTAAGATCAGCAATGGGGATTGTGACTGA 993 0.4008 MGLVVSEDALKKLQALMDQVEEEPLLRTFQNVHQGCVTETLIRFLKAREWNVTKAHKMIIDCLNWRVQNEIDNILSKPIIPTDLYRGIRDSQLVGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGKPITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLKIMDCASLPHFCKREGSGSSRHSDNGSGNENCYSFDHPFHQKLYNHIKEQSRIHEVVEPIKQGSFHVDFPEPPAEKAEIVKTLESELHKFKISNGDCD 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02141 330 CDD SEC14 85 243 IPR001251 -
Viun6g02141 330 Coils Coil 3 23 - -
Viun6g02141 330 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 241 IPR001251 -
Viun6g02141 330 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 2 327 - -
Viun6g02141 330 SMART sec14_4 88 249 IPR001251 -
Viun6g02141 330 SUPERFAMILY CRAL/TRIO domain 83 244 IPR036865 -
Viun6g02141 330 SMART CRAL_TRIO_N_2 37 62 IPR011074 -
Viun6g02141 330 Pfam CRAL/TRIO domain 92 243 IPR001251 -
Viun6g02141 330 Gene3D - 4 293 IPR036865 -
Viun6g02141 330 Pfam CRAL/TRIO, N-terminal domain 9 61 IPR011074 -
Viun6g02141 330 SUPERFAMILY CRAL/TRIO N-terminal domain 7 78 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02141 Viun-Chr6 27389813 27393674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02141 1 327 Acyl Lipid Metabolism Gene Families AT5G47730 72.783 1.13e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02141 K26544 - gmx:100793867 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02141 6 27389813 27393674 Viun6g02141 6 27389813 27393674 ECH
Viun3g06012 3 64133590 64137559 Viun6g02141 6 27389813 27393674 PCT