Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g06012 ATGGGGGTTGGTTCCCAGGATGCCATTAAGCAGTTCCAGGCATTCATTGAACAAGTTGAGGAGCCTTTGCGAGGAACGTTTCAGAATGTTCATCAAGGATATGTCACCGAAACTTTAATGCGGTTTCTTAAAGCAAGGGACTGGGATCCTTCTAAGGCCTATAAAATGTTGGTTGACTGTTTAAATTGGAGAGTGCAAAATGAGATTGACCATATATTATCTAAACCAATTGTTCCTGCTGATTTATATAGAGCAGTGCGTGATTCACAGCTCATAGGTTTGTCTGGTTACTCCAAAGAGGGTCTGCCTGTCTTTGCAATCGGTGCTGGGCTTAGCACATTTGACAAAGCATCTGTCCATTATTACGTGCAGTCTCACATTCAAATTAATGAATATCGTGACCGTATAATATTGCCTTCTGCATCAAAGAAGCATAAGCGGACTATTACCACTTGTATAAAGGTTTTGGACATGACCGGTCTGAAGTTATCAGCCTTGAATCAGATTAAGTTGTTAACTATTATATCCTCCATTGATGACCTGAATTACCCTGAGAAGACAAATACTTATTACATTACAAATGCTCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAACCACTTTTACAAGAGAGGACAAGAAGAAAAGTACAGGTTTTACCTGGTTGTGGTCGAGATGAGCTGTTGAATGTCATGGATTACTCGTCGCTACCTCATTTTTGCAGAAGAGAAGGCTCCGGATCATCCAGACATTCAGAAACTGGAAGTGAAAATTGCTATTCTTTGGATCATCCCTTCCATCAAGAGCTCTACAACCACATCAAGCAGCAAGCCAGACTCCGTGAAGCTGTTGAACCCATCAAACACGGCTCGTTTCATGTGGATTTTCCAGAACCTCCTGATGATGAAGTAGAGATTGCCAAGAATATAGAGTCAGAGTTACACATGTTTGAGAACGGCAATGGTGTCTAA 975 0.4113 MGVGSQDAIKQFQAFIEQVEEPLRGTFQNVHQGYVTETLMRFLKARDWDPSKAYKMLVDCLNWRVQNEIDHILSKPIVPADLYRAVRDSQLIGLSGYSKEGLPVFAIGAGLSTFDKASVHYYVQSHIQINEYRDRIILPSASKKHKRTITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYITNAPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLNVMDYSSLPHFCRREGSGSSRHSETGSENCYSLDHPFHQELYNHIKQQARLREAVEPIKHGSFHVDFPEPPDDEVEIAKNIESELHMFENGNGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g06012 324 Gene3D - 4 288 IPR036865 -
Viun3g06012 324 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Viun3g06012 324 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Viun3g06012 324 CDD SEC14 83 241 IPR001251 -
Viun3g06012 324 SMART sec14_4 79 247 IPR001251 -
Viun3g06012 324 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 239 IPR001251 -
Viun3g06012 324 SUPERFAMILY CRAL/TRIO domain 81 278 IPR036865 -
Viun3g06012 324 SUPERFAMILY CRAL/TRIO N-terminal domain 13 76 IPR036273 -
Viun3g06012 324 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 323 - -
Viun3g06012 324 Pfam CRAL/TRIO, N-terminal domain 29 59 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g06012 Viun-Chr3 64133590 64137559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g06012 1 324 Acyl Lipid Metabolism Gene Families AT5G47730 72.222 1.19e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g06012 K26544 - gmx:547507 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06012 3 64133590 64137559 Viun6g02141 6 27389813 27393674 PCT