Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01820 ATGGAAAGCAACCGATCCGCGAGAGAGAAAGAGAGCATGGTGGAAGAAGTGTTCGAGGACATGTTGCCAGTGATGGCAGAGAAGCTGGGTGTGGAGACCTTTGTGTCTGAGTTGTGTGGAGGTTTCAAGCTTCTGGCCGACCCAGAAACGGGTTTGATCAGTGGTGAGAGTCTGATGAGGAATTCAGCTCTATTGGGTATGGATGGGATGAGCAAAGAGGAAGCAGAGGCCATGGTTGGACAAGGCGATCTTGATGGGGATGGGAAGCTCAATGAGACTGAGTTTTGCATCCTTATGCTCAGGCTTAGCCCTGGGATCATGGAAGAAGCCGAGGCTTGGCTTCACAAGGCACTTCAACAAGACCTCACCAAATTCTGCAATCAATCGTAA 390 0.5026 MESNRSAREKESMVEEVFEDMLPVMAEKLGVETFVSELCGGFKLLADPETGLISGESLMRNSALLGMDGMSKEEAEAMVGQGDLDGDGKLNETEFCILMLRLSPGIMEEAEAWLHKALQQDLTKFCNQS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01820 129 SUPERFAMILY EF-hand 11 103 IPR011992 -
Viun6g01820 129 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Viun6g01820 129 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Viun6g01820 129 PANTHER CALCIUM-BINDING PROTEIN KIC 16 124 IPR044205 GO:0005509
Viun6g01820 129 Pfam EF-hand domain pair 49 101 IPR002048 GO:0005509
Viun6g01820 129 Gene3D - 15 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01820 Viun-Chr6 25372614 25373318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01820 14 129 EF-hand Containing Proteins AT2G46600 66.379 1.02e-51 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01820 K24345 - gmx:100787197 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01820 6 25372614 25373318 Viun10g02187 10 36679792 36680534 PCT