Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02187 ATGGAAAGCATGAAGCAAAGCAGCAGCATGGAGACAGAGACAGAGACAGAGTTTGAGGACTTGCTGCCATTGATGGCAGAGAAGCTTGATGTGGAGTCCTTTGTTTCAGAACTGTGTGGGGGTTTCAAGCTTCTGTCAGACCCAGAAACAGGTTTGATAACAAGTCAGAGTCTTTTGACAAATTCAGCTCTTCTTGGCATGGAAGGCATGAGTATGGAGGATGCAGATGCGATGGTTAGACAGGGTGATCTTGATGGAGATGGAAAGCTTAATCAAACTGAGTTTTGCATTCTCATGGTAAGGCTCAGCCCTGGAATCATGGAACATGCTGAGGCATGGCTGGAAAAGGCAATTCATCAAGAACTCACCAAGTCCTAG 378 0.4603 MESMKQSSSMETETETEFEDLLPLMAEKLDVESFVSELCGGFKLLSDPETGLITSQSLLTNSALLGMEGMSMEDADAMVRQGDLDGDGKLNQTEFCILMVRLSPGIMEHAEAWLEKAIHQELTKS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02187 125 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Viun10g02187 125 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Viun10g02187 125 Gene3D - 15 125 - -
Viun10g02187 125 Pfam EF-hand domain pair 49 101 IPR002048 GO:0005509
Viun10g02187 125 SUPERFAMILY EF-hand 32 109 IPR011992 -
Viun10g02187 125 PANTHER CALCIUM-BINDING PROTEIN KIC 15 124 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02187 Viun-Chr10 36679792 36680534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02187 2 122 EF-hand Containing Proteins AT2G46600 66.942 4.91e-55 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02187 K24345 - gmx:100802677 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02187 10 36679792 36680534 Viun10g02187 10 36679792 36680534 ECH
Viun6g01820 6 25372614 25373318 Viun10g02187 10 36679792 36680534 PCT