Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01379 ATGATGGCGGAACACCAAAGAATTCATCCTGTTCATGATGTGGAGGCACCACACAGACCTCTGGTGCCTGGAAACAGTACTAAATCTGATAGGGTTTTTCCTAAACGAAGTTTTCCTGTGATGCATTCGAAGCCACCGAAGAGAAGAAGAAGCTGTTGCTGCAGGTTTTTGTGTTGGACACTTAGCATATTGCTGATTTTGATCATTGCTATTGGCATCACTGTAGGGATCATGTACCTTGTTTTTAGGCCAAAGCTCCCAAAATACTCAGTGGACCAACTGAGGATAACCCAGTTCAATGTTTCTGACAACAACACCCTCTCAGCCACCTTCAATGTGGCAATCACTGCAACAAATCCGAACAAGAAGATTGGGATATACTATGAGGGTGGAAGCCACATAAGGGCTTTGTACATGGGAACACAATTGTGTGAAGGGTCTTTGCCAAAGTTCTACCAGGGTCACAGGAACACCACAGTGCTTGATCTGTCTCTATCAGGTGAAGCACAAGATGCAAGTTCTTTAACAAGTAGAATTCAGGAGCAGCTGCAACAGACCAATAACATTCCCCTTGATCTTATGGTTAATCAACCTGTGAGGGTTAAGCTTGGTAAATTGAAGCTCTTCAAGGTCAAGTTCAGGGTTAAGTGCAAGCTTGTGGTGGATAATCTTGGTGCTAGTAATGATATTAGCATTTCAAGCAGTAGTTGTAAGTTCAGACTCAGGTTATGA 732 0.4317 MMAEHQRIHPVHDVEAPHRPLVPGNSTKSDRVFPKRSFPVMHSKPPKRRRSCCCRFLCWTLSILLILIIAIGITVGIMYLVFRPKLPKYSVDQLRITQFNVSDNNTLSATFNVAITATNPNKKIGIYYEGGSHIRALYMGTQLCEGSLPKFYQGHRNTTVLDLSLSGEAQDASSLTSRIQEQLQQTNNIPLDLMVNQPVRVKLGKLKLFKVKFRVKCKLVVDNLGASNDISISSSSCKFRLRL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01379 243 Pfam Late embryogenesis abundant protein 115 218 IPR004864 -
Viun6g01379 243 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 29 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01379 Viun-Chr6 22507982 22509049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01379 47 243 EF-hand Containing Proteins AT5G21130 30.964 4.38e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01379 - - gmx:100789322 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01379 6 22507982 22509049 Viun6g01379 6 22507982 22509049 ECH
Viun6g01379 6 22507982 22509049 Viun8g02054 8 31084446 31085586 PCT