Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00921 ATGAATGTTCTGGTTCTAGGGCGCTTTTTCACTTCTCCATTATATAAGACTTCCCCTCTCACTCCCTCCCAAATCCAATTCACACCCATTTTCCTTCATCCCTTAAAGCTCCAACCTTTGCACGCAATTCACCTCTTCTCCCTCCACATGGCCACTTGCGTGGACGCCCCAACCCCTCTTTCTCGCAAGCCAAACGCCCCCAATTCCTCCGATGACCATTCTTTCAATTACGTCAAATTCTGCCGACCCACCTTCTCCGATCGCGTCCCCTGCTTACCCATTTGCAAGAATCGGGAGATGGCCTTCTCACGTGTGGAGGACTTGGACACACGTGTGGAGGGTGGTGTTGGTGTTCTTGAGTTCGAGGTTGTTGATCTGTGGTTGAAGATTCAGGAGGAGGCCAGGTCGGATGTGGATCAGGAACCTATTCTGTCCAGTTACTATTTCAGTTCCATTTTGTCTCACAAATCATTAGAGAGTGCCTTGGCCAACCAACTCTCCACCAATTTGAGCAGTTTGAGCCTTCCAAGCAGCACCCTTTTTGAACTTTTCTTGGGTGTTTTGATCGGTGATGGTGGAGATGACATCATATGTGCTGTGAAGGATGATTTAGTTGCTGTCAAAGAGAGAGACCCTGCATGCATTAGTTATGTGCATTGTTTGTTAAATTTCAAAGGGTTTCTTGCATGCCAGGCTCACAGGATTGCTCACAAATTGTGGCTTCAAGGGAGGAAGGTTCTGGCCCTGTTGATTCAGAATAGGGTGTCTGAGGTTTTTGCTGTGGATATTCACCCTGGTGCACAGATTGGACGTGGAATTTTGCTGGATCATGCCACTGGGCTTGTGGTGGGGGAGACTGCAACTATTGGCAATAATGTTTCAATTTTGCATAATGTGACTTTGGGAGGGACTGGTAAGTCAAGTGGCGATAGACACCCTAAGATTGGTGATGGGGTGTTGATAGGTGCAGGGACTTGTATTTTGGGAAATATTAAGATCGGTGATGGGGCTAAGATTGGTGCTGGTTCTGTGGTGTTGAAGGATGTTCCAGCAAGGACTACTGCAGTTGGAAACCCTGCTAGGTTGATTGGAGGGAAGGACAACCCTATTAAATTGGATAAGATGCCTAGTTTTACCATGGATCACACTTCATACATCTCTGAGTGGTCTGATTATGTTATCTAG 1185 0.4684 MNVLVLGRFFTSPLYKTSPLTPSQIQFTPIFLHPLKLQPLHAIHLFSLHMATCVDAPTPLSRKPNAPNSSDDHSFNYVKFCRPTFSDRVPCLPICKNREMAFSRVEDLDTRVEGGVGVLEFEVVDLWLKIQEEARSDVDQEPILSSYYFSSILSHKSLESALANQLSTNLSSLSLPSSTLFELFLGVLIGDGGDDIICAVKDDLVAVKERDPACISYVHCLLNFKGFLACQAHRIAHKLWLQGRKVLALLIQNRVSEVFAVDIHPGAQIGRGILLDHATGLVVGETATIGNNVSILHNVTLGGTGKSSGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKDVPARTTAVGNPARLIGGKDNPIKLDKMPSFTMDHTSYISEWSDYVI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00921 394 PANTHER SERINE ACETYLTRANSFERASE 123 394 - -
Viun6g00921 394 SMART SATase_N_2_a 126 232 IPR010493 GO:0005737|GO:0006535|GO:0009001
Viun6g00921 394 FunFam Serine acetyltransferase 262 387 - -
Viun6g00921 394 NCBIfam serine O-acetyltransferase 200 361 IPR005881 GO:0005737|GO:0006535|GO:0009001
Viun6g00921 394 CDD LbH_SAT 259 359 IPR045304 -
Viun6g00921 394 Pfam Bacterial transferase hexapeptide (six repeats) 312 346 IPR001451 -
Viun6g00921 394 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 321 349 IPR018357 GO:0016740
Viun6g00921 394 Gene3D serine acetyltransferase, domain 1 118 261 IPR042122 -
Viun6g00921 394 FunFam serine acetyltransferase 1, chloroplastic 112 261 - -
Viun6g00921 394 Pfam Serine acetyltransferase, N-terminal 126 232 IPR010493 GO:0005737|GO:0006535|GO:0009001
Viun6g00921 394 Gene3D Hexapeptide repeat proteins 262 383 - -
Viun6g00921 394 SUPERFAMILY Trimeric LpxA-like enzymes 126 364 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00921 Viun-Chr6 18898866 18900432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00921 126 384 Miscellaneous Gene Families AT2G17640 53.668 1.20e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00921 K00640 - gmx:606507 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00921 6 18898866 18900432 Viun6g00921 6 18898866 18900432 ECH
Viun6g00921 6 18898866 18900432 Viun8g02968 8 37179648 37181098 PCT