Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00890 ATGGATTCCCCACAATCTGTTGTTTCACCCTTCAGAAGCTCAGTTTTGGGTGAGGGTGAGAAGCACAAGTCTGAAGTTTTCTCGGGAAACTCTAGTCCCTTGTCCAAGGACATTGAAGTGAATGGGAAGGAAGTTGTCATGTCAAATGTAGAGGAGTATCTTGGAGTGCTTGATGTTTACATACATCAGGCCAGGGACATTCAGAACATCTGCATATACCACAAGCAAGATGTTTACGCTAGGATTTGCCTGACCAGTAATCCTGAGAACACTGTGTCTACCAAAACCATCAATGGAGGAGGAAGGAACCCTGTGTTCAATGAGAATCTTCAAGTCAATGTTAGAACTGTTGATGCTTCTCTCAAGTGTGAGATATGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGACCAGCTGCTTGGTTTTGCTTTGGTGCCTTTGTCTGAAGTTCTAGTCCAGAATGGGAAACTGGAGAAAGAGTTCTCTCTTTCTTCAACCGATCTATTCCATTCTCCTTCAGGTTTTGTTCAGTTGACACTGTCTTACAATGGTGCTTCACCTGATGTTATGGCAATTTCTGCAATGCCAAGCAAGGTGGCCACAGATGCCCCTGTGCAGGATTCGGAAACATCCGAATCTCTGGCCCGGGAATTTGACAAAATTGAGTTCCCGGATCCGAAGATTGTGAATGAAGACCACTTGATGGTTTCAGAGTACTTTGGCATTCCATGTGAGGAGACTCAGTGCTCTGATAGCTTGGCTACTTCTGATGCCGAAAATCGCAGTTGCGAAGCCGGTGTTCGTCTTGTGGAAAGCTTCTCAGCATGCAGTGGTGAGTCTGTTCAGCCACCTAAGGTTGATTCCCCACCCAGCAGTGTGTCAACAAATGGGGTTTCTTCCCCTTCTGTGCCTGCAAGCTCAGAATCATCTGATGCTGCTGCTTCGAAGTCTCCCATTCAGGAGCAGGTTTCAGGCACCAAAGAGGACAAAAATGTGGAAGCCAAAGATGGTGACAGTGATTCCTCAAGTGGGGTTCCTAGTGACTCATTCCCTAAGCCTGTTGTGACTGTGAACATTGAGCCTGAGCCAAAGGTGGTGCAGCAGGATATAGTGGACATGTACATGAAAAGCATGCAGCAATTTACTGAGTCACTTGCAAAAATGAAACTCCCTATGGACTTCGAAAGTGAACCAACTAGTTCAGGAAATTCAACCACTGAGCAAAAATTACAGCCATCAAAGAGCAACAATTCCCGTGTGTTTTATGGTAGCAGAGCTTTCTTCTGA 1287 0.4553 MDSPQSVVSPFRSSVLGEGEKHKSEVFSGNSSPLSKDIEVNGKEVVMSNVEEYLGVLDVYIHQARDIQNICIYHKQDVYARICLTSNPENTVSTKTINGGGRNPVFNENLQVNVRTVDASLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLTLSYNGASPDVMAISAMPSKVATDAPVQDSETSESLAREFDKIEFPDPKIVNEDHLMVSEYFGIPCEETQCSDSLATSDAENRSCEAGVRLVESFSACSGESVQPPKVDSPPSSVSTNGVSSPSVPASSESSDAAASKSPIQEQVSGTKEDKNVEAKDGDSDSSSGVPSDSFPKPVVTVNIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDFESEPTSSGNSTTEQKLQPSKSNNSRVFYGSRAFF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00890 428 Gene3D C2 domain 51 210 IPR035892 -
Viun6g00890 428 MobiDBLite consensus disorder prediction 393 428 - -
Viun6g00890 428 MobiDBLite consensus disorder prediction 277 325 - -
Viun6g00890 428 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 184 IPR035892 -
Viun6g00890 428 CDD C2 57 163 - -
Viun6g00890 428 MobiDBLite consensus disorder prediction 396 422 - -
Viun6g00890 428 ProSiteProfiles C2 domain profile. 30 161 IPR000008 -
Viun6g00890 428 MobiDBLite consensus disorder prediction 277 356 - -
Viun6g00890 428 Pfam C2 domain 55 162 IPR000008 -
Viun6g00890 428 PANTHER EXPRESSED PROTEIN 1 428 - -
Viun6g00890 428 SMART C2_3c 56 159 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00890 Viun-Chr6 18674884 18677462 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00890 - - gmx:100796499 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00890 6 18674884 18677462 Viun6g00890 6 18674884 18677462 ECH
Viun6g00890 6 18674884 18677462 Viun8g02922 8 36942432 36945365 PCT