Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04056 ATGTCTGCTGCGGTGTGTGGAAACAAGAGATCTTTGTTCGAAGAGCTTCCACCTTCCCCGCCAGTATCCAAGAGGCTCCGCTGTTCATCTTCCCCAATTCGCCTCTCTCTCCCTTCCCTCATCGATCACCTTCGCCCTCTCTTCCCTCATATGGATGATCAGATCCTCGAGAAAGCCCTCCAAGAAAATGGTAACGACCTAGATGCTGCCATCAAGAGCCTCCACGGCCTCCGTCTGGAATCTAACGATGATAATTCTCAAGCTGCTCCTCAACCCCACCCTGACGTTGTACACACAGGTTCTTTGGAAGAGAATGTGGATGCTGCATGTGCTTCTGGGGGTCAGCCGGCTGCAGACAACTTTCCTGCTGATGGAGCAGAGTGGATTGACTTGTTTGTCAGAGAGATGACATGTGCTACCAGCGTTGATGATGCCAGAGCTCGAGCTGCTAGATTACTAGAGGTTTTAGAGAAATCTATTAGTGCACACGCCACTTCTGGGGCAACAACTGCCCTTCAAAGGGAAAATTTGATGCTGAAGGAGCAAATTGAAGCCCTGACTAAGGAGAAAAATTGTTTTAAAAATGCTTTTAAAATCCAGTTTGAACGTCTTTCCGATTACGATAGTAAAAACCAAGAGTTGCAGCAGTTGAAGCAGTTGGTGTCTCAATATCAGGAGCAGATCAGAACTCTTGAGGTGAATAACTATGCTTTGCGAATGCATTTGAATCAGGCACAACAGTACAACTCTTTTCCTGGGCGTTTCCCTCCTGATGCTTTCTAG 783 0.4725 MSAAVCGNKRSLFEELPPSPPVSKRLRCSSSPIRLSLPSLIDHLRPLFPHMDDQILEKALQENGNDLDAAIKSLHGLRLESNDDNSQAAPQPHPDVVHTGSLEENVDAACASGGQPAADNFPADGAEWIDLFVREMTCATSVDDARARAARLLEVLEKSISAHATSGATTALQRENLMLKEQIEALTKEKNCFKNAFKIQFERLSDYDSKNQELQQLKQLVSQYQEQIRTLEVNNYALRMHLNQAQQYNSFPGRFPPDAF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04056 260 Pfam CUE domain 39 73 IPR003892 GO:0043130
Viun5g04056 260 Coils Coil 169 196 - -
Viun5g04056 260 CDD CUE 39 74 - -
Viun5g04056 260 Coils Coil 207 234 - -
Viun5g04056 260 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 260 - -
Viun5g04056 260 Gene3D - 29 85 - -
Viun5g04056 260 ProSiteProfiles CUE domain profile. 36 79 IPR003892 GO:0043130
Viun5g04056 260 SUPERFAMILY UBA-like 37 83 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04056 Viun-Chr5 48083213 48085763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04056 - - vum:124832196 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04056 5 48083213 48085763 Viun5g04056 5 48083213 48085763 ECH
Viun5g04056 5 48083213 48085763 Viun10g02756 10 40565817 40570262 PCT