Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03956 ATGGGTGCTTCTCTTCCTCCCAAAGAGGCTAACCTCTTCAAGCTTATTGTCAAATCCTATGAAACCAAACAATACAAAAAGGGCCTTAAAGCAGCGGATGCCATTTTGAAAAAATTCCCAGACCATGGAGAAACTTTATCAATGAAGGGGTTGACGTTGAATTGCATGGATCGCAAGTCTGAGGCATATGAATTGGTTCGCCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTTTGGTCTCCTTTATCGGTCAGACAGAGAATATAGGGAGGCAATAAAGTGCTATCGCAATGCATTGAAAATAGATCCTGACAATATTGAAATATTGCGGGACTTGTCACTTTTACAGGCTCAAATGCGAGATTTAACTGGCTTTGTTGAGACACGACAACAACTTCTGACACTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCACATCATTTGAACTCTAGTGCATCAAAGGCTATTGAAATTCTTGAAGCGTATGAAGGGACTTTGGAAGATGATTATCCTCCAGAAAATGAACGGTGTGAACATGGAGAAATGCTTTTGTATAAGATCTCCTTGTTGGAAGAATGTGGATTTTTCCAGAAAGCTCTTGAGGAGTTGCAAAAGAAAGAGTTAAAAATTGTTGATAAGCTTGCATATAAAGAGCAAGAGGTCTCACTTCTAATCAAGCTTGGTCGCTTAGAAGAAGGGGAGAAATTGTTCCGTGCATTACTTAGCATGAATCCTGACAATTATAGATATTACGAAGGCCTCCAAAAATGTGTTGGATTATACTCAGAAAATGGCCATTTTTCTCCTGATGAAATAGATCAGTTGGATGCCTTGTACAAAACACTTGAGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTGGACTTTTTACAAGGTGACAAGTTTCGAGAAGCAGCAGATAGTTATATTAAGCCTCTCCTAACTAAGGGAGTTCCATCTCTTTTCTCCGATCTTTCTTCGTTATACAATCAACCTAGGAAGGCAGACGTTTTGGAACAGATCATTCTTGAGTTAGAGAGTTCACTTAAGTCCACTGGTCAATACCCTGGACGGATGGAAAAAGAGCCACCTTCAACCCTGATGTGGACTTTGTTTTTCTTGGCTCAGCATTATGACAGACTGGGCCAATATGAAATTGCTCTTTCTAAAATTGATGAGGCTATTCATCACACGCCTACTGTCATTGATCTGTATTCAGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGATGTATGGATCTTGCTGATCGTTATGTAAATAGTGAATGTGTTAAGCGGATGCTGCAGGCTGATCAGGTGGCTTTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGTGATCAGCACAACAACCTACATGATATGCAGTGCATGTGGTACGAGCTTGCCTCTGCTGAAAGCTATTTCCGCCAAGGTGATCTTGGACTTGCTCTAAAGAAATTTCTAGCTGTGGAGAAGCATTATGCTGATATTACAGAAGATCAATTTGATTTTCATTCATACTGCTTAAGGAAAATGACATTACGTCAATACGTGGAAATGCTTAAATTTCAAGACCAATTGCATTCGCATGCATACTTTCATAAAGCTGCTGTTGGAGCTATCAGATGCTATATCAAATTGCATGATTCTCCTCCAAAGTCAACAGCTGAGGAAGATAACGACATGTCTAAGTTGCTTCCTTCTCAGAAAAAGAAAATGAGGCAAAAACAAAGAAAGGCAGAAGCTAGAGCTAAGAAAGAGGCAGAAATAAAAAATGAAGAATCAAGTGCTGGTGGGGTATCAAAGTCTGGGAAACGGCATGCAAAACCTGTTGATCCTGATCCACGTGGTGAAAAATTGACGCAGGTTGAAGATCCGCTGTTGGAAGCCACAAAATACCTGAAGCTGCTTCAGAAGAATTCACCTGACTCGTTGGAGACACACATTCTCTCTTTTGAGTTATATATGAGGAAACAGAAAATTTTACTTGCCTTCCAGGCTGTTAAGCAGTTACTGAGGTTGGATGCTGAACACCCTGATTCTCATCGTTGTTTGATTAAATTCTTCAATAAAGTGGGATCCATGAATGCTCCTGTGACTGACAGTGAGAAACTTGTTTGGAGTGTCTTGGACGCTGAGCGCCAAACTATTAGTCAGCTGCATGGAAAATCTCTGTTTGAGACAAATAATTCTTTCCTTGAAAAACATGAAGATTCTTTGATGCATAAAGCTGCTTTTGGGGAAATGTTGTATGTTTTGGATCCCAACAAAAGGCCTGAGGCTGTCAAGTTGATTGAAGGGTCAACAAATAATCTTGTGCCAAGAAATGGTGTGCTTGAACCGATCGGGGAATGGAAACTTAAAGATTGTATTGCAGTTCATAAGCTTCTTAGAACAGTGCTTGTTGATGATGATGCGGCATTAAGATGGAAAGAGCGTTGTGCCAAGTTTTTCCCATACTCCACCTACTTTGAGGGCAGTCGTAGCTCTGCCTTTAATCAGATAGGGAAGAGCACTGAAAATGGGAGTTCTAATCATGTGGAATCCACCCCATCAAATGGGAAACTAGAGGCATTTAAAGATCTAACCATCTGA 2673 0.4055 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSSASKAIEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEECGFFQKALEELQKKELKIVDKLAYKEQEVSLLIKLGRLEEGEKLFRALLSMNPDNYRYYEGLQKCVGLYSENGHFSPDEIDQLDALYKTLEQQYKWSSAVKRIPLDFLQGDKFREAADSYIKPLLTKGVPSLFSDLSSLYNQPRKADVLEQIILELESSLKSTGQYPGRMEKEPPSTLMWTLFFLAQHYDRLGQYEIALSKIDEAIHHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYFRQGDLGLALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRQYVEMLKFQDQLHSHAYFHKAAVGAIRCYIKLHDSPPKSTAEEDNDMSKLLPSQKKKMRQKQRKAEARAKKEAEIKNEESSAGGVSKSGKRHAKPVDPDPRGEKLTQVEDPLLEATKYLKLLQKNSPDSLETHILSFELYMRKQKILLAFQAVKQLLRLDAEHPDSHRCLIKFFNKVGSMNAPVTDSEKLVWSVLDAERQTISQLHGKSLFETNNSFLEKHEDSLMHKAAFGEMLYVLDPNKRPEAVKLIEGSTNNLVPRNGVLEPIGEWKLKDCIAVHKLLRTVLVDDDAALRWKERCAKFFPYSTYFEGSRSSAFNQIGKSTENGSSNHVESTPSNGKLEAFKDLTI 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03956 890 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Viun5g03956 890 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Viun5g03956 890 SMART tpr_5 43 76 IPR019734 GO:0005515
Viun5g03956 890 SMART tpr_5 380 413 IPR019734 GO:0005515
Viun5g03956 890 SMART tpr_5 77 110 IPR019734 GO:0005515
Viun5g03956 890 Gene3D - 505 725 - -
Viun5g03956 890 PIRSF NAT_A 1 818 IPR021183 -
Viun5g03956 890 MobiDBLite consensus disorder prediction 577 594 - -
Viun5g03956 890 SUPERFAMILY TPR-like 17 260 IPR011990 GO:0005515
Viun5g03956 890 MobiDBLite consensus disorder prediction 631 647 - -
Viun5g03956 890 SUPERFAMILY TPR-like 381 707 IPR011990 GO:0005515
Viun5g03956 890 SUPERFAMILY TPR-like 233 443 IPR011990 GO:0005515
Viun5g03956 890 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Viun5g03956 890 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 826 - -
Viun5g03956 890 MobiDBLite consensus disorder prediction 577 647 - -
Viun5g03956 890 Pfam TPR repeat 84 123 - -
Viun5g03956 890 Gene3D - 2 503 - -
Viun5g03956 890 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03956 Viun-Chr5 47484500 47497927 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03956 K20792 - gmx:100776968 1578.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03956 5 47484500 47497927 Viun5g03956 5 47484500 47497927 ECH
Viun5g03956 5 47484500 47497927 Viun10g02695 10 40215837 40229383 PCT