Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02695 ATGGGCGCTTCTCTGCCCAACAAGGAGGCCAACCTCTTCAAGCTCATCGTCAAATCATATGAAACCAAACAGTATAAAAAGGGCCTCAAAGCTGCTGATACCATTTTGAAAAAATTTCCAGACCATGGAGAAACTTTATCGATGAAGGGTTTGACACTAAATTGCATGGATCGTAAGTCTGAAGCTTATGAACTTGTTCGTCAAGGATTAAAGAATGACCTTAAAAGTCATGTCTGCTGGCATGTTTTTGGTCTCCTTTATCGATCAGACAGAGAATACAGGGAAGCGATCAAGTGCTATCGAAATGCACTGAAAATAGATCCTGACAATATTGAAATTCTTCGTGATCTATCACTCCTACAGGCACAAATGCGAGATTTATCGGGCTTTGTTGAGACAAGACAACAACTTTTGACTTTGAAGCCAAATCATCGCATGAATTGGATTGGATTTTCCGTAGCCCATCATTTGAACTCAAATGCATCCAAAGCAGTTGAAATTTTGGAAGCTTATGAAGGGACTTTGGAAGAGGATTATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTGTACAAGATCTCGTTGTTAGAGGAATGTGGGTTTCTCGAGAGAGCTCTTGAGGAGTTGCACAAAAAAGAATTTAAAATTGTTGATAAGCTTGCATACAAAGAACAAGAGGTGTCACTTCTAGTAAAGCTTGGTCACTCACAAGAAGGCGAAGCTTTGTACCGGGCATTACTTTCCATGAATCCTGATAATTATAGATACTATGAAGGACTCCAAAAGTGTGTTGGACTTTATTTAGAAGATGGGCAGTACTCGCCTGATCAAATAGACCAGTTAGATTCCTTGTACAAAACACTTGTACAACAATACAAGTGGTCTTCTGCTGTTAAGAGGATACCGCTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCAGACAATTATATTAGGCCTCTCTTAACCAAGGGGGTTCCCTCTCTGTTCTCTGATCTATCATCTCTGTATAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAGCAGTCAATTAGGACGTCAGGCCAATATCCTGGAGGGACAAACAAAGAACCCCCTTCAACTCTTATGTGGACTTTGTTTTTATTGGCTCAGCATTATGACAAGCGGGGTCAATTTGAAATTGCTCTATCTAAAATTGATGAAGCTATAGAACATACACCCACAGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAGTGTGTTAAACGGATGCTGCAGGCTGATCAGGTGTCTTTGGCCGAAAAAACTGCTGTATTGTTCACAAAGGATGGGGATCAACACAATAACCTTCACGACATGCAGTGCATGTGGTATGAGCTAGCCTCCGGCGAAAGCTATTTCCGCCAGGGTGATCTTGGACGGGCACTCAAAAAATTTTTAGCAGTGGAAAAGCATTATGCTGATATCACGGAGGACCAATTTGATTTTCATTCTTACTGCTTACGGAAAATGACATTGCGTACTTATGTGGAAATGCTTAAATTTCAAGACCAATTGCATTCACATTCATATTTTCACAAAGCAGCCGCTGGGGCTATCAGATGCTATATTAAGTTGTATGATTCTCCCCCAAAGTCTACAGCAGAGGAAGATGATAATATGGCGAAGTTACTTCCTTCTCAGAAGAAGAAAATGAGGCAAAAGCAGAGAAAGGCAGAAGCAAGAGCCAAAAAAGAGGCAGAAGAAAAGAATGAAGAGTTGAGTGCAGGTGGGGTATCGAAGTCTGGGAAGCGGCATGTGAAGCCTGTTGATCCTGATCCAAACGGGGAGAAGTTGTTGCAGGTTGAAGATCCATTGTCAGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACACACTTGCTCTCTTTTGAATTATATACAAGGAAACAAAAAACTTTGCTTGCCTTTCAGGCTGTGAAGCAGTTACTGAGATTGGACCCTGAACACCCTGATTCTCATCGTTGTTTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCTCCTGTGACTGACAGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAACGCCCAAATATTAGCCAGGTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTATCCTTGAAAAACATAAAGATTCTTTGATGCATAGAGCAGCTTTTGTAGAAATCTTGCACATTTTGGATTCAAACAGAAAATCCGAGACTGTTAAGTTCATTGAAGAATCAACAAATAACATTGTGCCTAGAAATGGCGCACTTGGACCTATCAGGGAATGGAAACTTAAAGACTGTATTGCAGTTCACCATCTTCTTGAAACAGTTCTTGCTGATCAGGATGCTGCATTAAGATGGAAGGTGCAATGTGCGGATTTCTTTCCCTATTCTACGTACTTTGAGGGAAGGCACAGCTCTGCTTCTCCCAATTCGGCCTTCAACCAGTTACGTAAGAACTCTGAAAATGAGAGTGTTAACCACATCACATCAAACGGAAAACTAGAGGCATTTAAAGATCTCACAATCTGA 2679 0.411 MGASLPNKEANLFKLIVKSYETKQYKKGLKAADTILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKPNHRMNWIGFSVAHHLNSNASKAVEILEAYEGTLEEDYPPENERCEHGEMLLYKISLLEECGFLERALEELHKKEFKIVDKLAYKEQEVSLLVKLGHSQEGEALYRALLSMNPDNYRYYEGLQKCVGLYLEDGQYSPDQIDQLDSLYKTLVQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELEQSIRTSGQYPGGTNKEPPSTLMWTLFLLAQHYDKRGQFEIALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHSYFHKAAAGAIRCYIKLYDSPPKSTAEEDDNMAKLLPSQKKKMRQKQRKAEARAKKEAEEKNEELSAGGVSKSGKRHVKPVDPDPNGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFELYTRKQKTLLAFQAVKQLLRLDPEHPDSHRCLIKFFHKVGSMNAPVTDSEKLIWSVLEAERPNISQVHEKSLFEANNSILEKHKDSLMHRAAFVEILHILDSNRKSETVKFIEESTNNIVPRNGALGPIREWKLKDCIAVHHLLETVLADQDAALRWKVQCADFFPYSTYFEGRHSSASPNSAFNQLRKNSENESVNHITSNGKLEAFKDLTI 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02695 892 MobiDBLite consensus disorder prediction 591 646 - -
Viun10g02695 892 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Viun10g02695 892 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515
Viun10g02695 892 SUPERFAMILY TPR-like 381 707 IPR011990 GO:0005515
Viun10g02695 892 Gene3D - 2 503 - -
Viun10g02695 892 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Viun10g02695 892 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Viun10g02695 892 PIRSF NAT_A 1 818 IPR021183 -
Viun10g02695 892 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 826 - -
Viun10g02695 892 MobiDBLite consensus disorder prediction 606 622 - -
Viun10g02695 892 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Viun10g02695 892 Pfam TPR repeat 84 123 - -
Viun10g02695 892 SMART tpr_5 380 413 IPR019734 GO:0005515
Viun10g02695 892 SMART tpr_5 43 76 IPR019734 GO:0005515
Viun10g02695 892 SMART tpr_5 77 110 IPR019734 GO:0005515
Viun10g02695 892 Coils Coil 596 624 - -
Viun10g02695 892 Gene3D - 505 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02695 Viun-Chr10 40215837 40229383 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02695 K20792 - gmx:100820094 1641.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02695 10 40215837 40229383 Viun10g02695 10 40215837 40229383 ECH
Viun5g03956 5 47484500 47497927 Viun10g02695 10 40215837 40229383 PCT