Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03860 ATGGATTTCCGTGCCCCGCCGCCATCTCCTGTGGCCTCCGCCAGGCGAACGTCCTCGCTCTCCAACGACGACGTTTTCCGCCGATTCTTGGAGACCTCTCTCCGTCTCCCGAACATTAACAACAACCACCGAAAGCCGCTTCCAAAGGTTGACTTTAGCTCCTTATGTTCCGACGACGCTCTTCGTCACGTCATTTCGGACTCTTTCGCAACTGTCGGATGCTTTCAGCTGCTCAACCATGGAATTCCACTGGACGTGATCGCGTCGCCGGCGGAAGCTTCTATCGCAATTTTCCAGGTGCCGCCGGAGAAGCGAGGCGGCGCAACGAGGTCAGCGGAGAGTCCGTGGGGTTTCGACGATGAAGATGAGTTCGTTTGGGGAAGAGATAAGGAGTTCAACCTCAGAATGCAGCAACTTTCGCCAACCGGATATTCCAATTTCAATAAGAAGATGGAGAATCTTGTGGCCAGGATAGAGAATGTGGCCGAGAAAATTTTGCAAGTGATACTCCAAGATTCTCCCCCAAAAATTGCAAACTCTGTGGACATGATTTGTGGGCATGAACGTGGGACACTTTGTTCTGTTTATAAGCACTGCTCAGATAACATGTCAGGACAATGTGCTAACTCTTTAAACTATGATGTGATCAGAATGCTGGTGAGGGGAAACCAATCCTCTCATTGCTTGTGCTTGCATCTATGTGACGGGTCTTCTGAGTTTCAGGTTTACTCTAAGAAAGGGTGGCTCTCTTTCTTTCCAGAAAAAGGAGCCCTTGTAATCACAGCTGGAGACCAAACTCAGATGTTGAGTGATGGACACTACAAGGACGTGATTGGAAGGCCAATATTTAAAGGTGAGAAAGAGGACTGCATTTCAATGGCTTTCCTCTATTCACCGCCAAACAAGAAGAGCAATTTTCAGAACAGTGGGGAAAGAACTATTTCTCTGGGCTTGCAAGTCCTATTGGCCATGATTTTGACCCTTGTGTGTCATGTCCTCTTTTATGTCTAA 1011 0.4817 MDFRAPPPSPVASARRTSSLSNDDVFRRFLETSLRLPNINNNHRKPLPKVDFSSLCSDDALRHVISDSFATVGCFQLLNHGIPLDVIASPAEASIAIFQVPPEKRGGATRSAESPWGFDDEDEFVWGRDKEFNLRMQQLSPTGYSNFNKKMENLVARIENVAEKILQVILQDSPPKIANSVDMICGHERGTLCSVYKHCSDNMSGQCANSLNYDVIRMLVRGNQSSHCLCLHLCDGSSEFQVYSKKGWLSFFPEKGALVITAGDQTQMLSDGHYKDVIGRPIFKGEKEDCISMAFLYSPPNKKSNFQNSGERTISLGLQVLLAMILTLVCHVLFYV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03860 336 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 2 335 - -
Viun5g03860 336 Gene3D - 16 311 IPR027443 -
Viun5g03860 336 Coils Coil 144 164 - -
Viun5g03860 336 SUPERFAMILY Clavaminate synthase-like 24 303 - -
Viun5g03860 336 Pfam non-haem dioxygenase in morphine synthesis N-terminal 47 108 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03860 Viun-Chr5 47053351 47055764 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03860 - - pvu:PHAVU_005G166600g 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03860 5 47053351 47055764 Viun5g03860 5 47053351 47055764 ECH
Viun5g03860 5 47053351 47055764 Viun10g02620 10 39779914 39781910 PCT