Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03840 ATGGGCAAGCTCCTTAGAACCATCCTCATTGCACAAAAGCTCCATCTTCGCTACCCCGAATTCATTTTCCCACCTCTCATTTCCCACTACTCTGCAACGGCGCATTCTTCCGAAGCTGACCACACGCACAGACCAACAAACGAAACCGCCACCACCGGTTGGAGTAGCTATGGGAACATCTACGATCGCCCAATTGCGCAGCAAGGCGATCACAGCGACGGAGATGAAAACCCTAGCGGTTTGAGGGGAAGTGATGTGGCAGTGGTGAAGAAAAAGGGGAAGGTGAAAGCTCAGTGGGTGTGCTCCGATTGTGGGCACACGACGGGGAAATGGTGGGGGACATGCCCCGAGTGCGAATTAACTGGCACGATGCAAGAGTTTCACGAGAGCAAATTAACTGACAAATCTAGAGGGGGGTTAGCCATTACCGAGGACGCAGTGGGCTCGTGGCTCCCACGACGACCTGAAGAGCTGCGCCCCGTCAAATTGGAAGAGGTGAACCGTGGATTCAATCACGACAAGTGGAGAATTCCTTTGTCTGGTTCCCTCGGAAATGAAGTTTCTACGGTGCTTGGTGGAGGTCTTGTACCAGGTTCTTTAACTTTGGTAGGTGGTGATCCTGGTATTGGGAAAAGTACTCTGTTGTTACAGATTTCAGCAATGATAGCAAATGAATGCAGTGATGGTGAAACACCTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTAAGCAAATTTGTGCTAGAGCTGATCGCCTTGGGATCAAGTCCAATATTTATTTATATTCAAGTACTGATATTGAGGACATATTGAGGAAAACTCATGGTCTATCCCCTTGTGCTCTGGTGGTTGATTCAATACAAACTGCTTACCTGAATACAGTAATAGGAAGTGCTGGAGGGATTACACAGGTGAAGGAATGTACTGCAGCTTTGATGCGATTTGCTAAAACAACTAACATCTCAGTTATTTTGATTGGACATGTGACCAAATCTGGAGAGATAGCAGGACCTCGCGTCTTGGAGCATATAGTTGATGTCGTTTTGTATATGGAAGGTGAGAAGTACTCTCCATATCGAATGCTTCGAGCTGTGAAAAATCGCTTTGGTTCCACTGATGAGCTTGCAGTTCTTGAGATGTCACAGTCAGGACTCCAGGTTGTTTCAAATGCCAGTGAAATGTTTCTCACTCAACAACACTCTGATTCAAATGTTTTAGCTGGACTTGCTATTGCTGTAATAATGGATGGTACAAGAACTTTTTTAGTTGAAATTCAGGCACTTTGCCTCACTCATAGCCCAGTTTCGAGTTCACAATCCAATGGGATCCATGTAAACAGAGCTAATATTATTAAATGTGTACTTATTAAGCAAGCAGGTCTTCATCTCCAGGATAATGCCGTGTTTTTGAATGTTGTTGGTGGATTCAAAGTGACAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATGTGCAGCAGTTTCTTGGAGTTCCCTATTCCAGACGGGACTGCGTTCATTGGTGAAATTGGCCTTAGTGGAGAGCTTCGCATGGTTCCTAGGATTGATAAAAGGGTTAACACAGTGGCGAAGTTGGGTTACAGAATGTGTGTAGTACCAAAGCAAGCTGAAAAACTTCTAGAAACCGAAGGTCTGGAAGAAATGAAAGTTGTAGGTTGCAAGGATCTGAAAGAGGTTATTAACACCGTATTTAGTAGAGTAATAGTTAACTGA 1734 0.4504 MGKLLRTILIAQKLHLRYPEFIFPPLISHYSATAHSSEADHTHRPTNETATTGWSSYGNIYDRPIAQQGDHSDGDENPSGLRGSDVAVVKKKGKVKAQWVCSDCGHTTGKWWGTCPECELTGTMQEFHESKLTDKSRGGLAITEDAVGSWLPRRPEELRPVKLEEVNRGFNHDKWRIPLSGSLGNEVSTVLGGGLVPGSLTLVGGDPGIGKSTLLLQISAMIANECSDGETPPVVYVSGEESLKQICARADRLGIKSNIYLYSSTDIEDILRKTHGLSPCALVVDSIQTAYLNTVIGSAGGITQVKECTAALMRFAKTTNISVILIGHVTKSGEIAGPRVLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSTDELAVLEMSQSGLQVVSNASEMFLTQQHSDSNVLAGLAIAVIMDGTRTFLVEIQALCLTHSPVSSSQSNGIHVNRANIIKCVLIKQAGLHLQDNAVFLNVVGGFKVTETAGDLAIAAAMCSSFLEFPIPDGTAFIGEIGLSGELRMVPRIDKRVNTVAKLGYRMCVVPKQAEKLLETEGLEEMKVVGCKDLKEVINTVFSRVIVN 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03840 577 PRINTS DNA repair protein radA signature 189 217 - -
Viun5g03840 577 PRINTS DNA repair protein radA signature 285 309 - -
Viun5g03840 577 PRINTS DNA repair protein radA signature 359 385 - -
Viun5g03840 577 PRINTS DNA repair protein radA signature 101 125 - -
Viun5g03840 577 PRINTS DNA repair protein radA signature 324 352 - -
Viun5g03840 577 PRINTS DNA repair protein radA signature 435 458 - -
Viun5g03840 577 NCBIfam DNA repair protein RadA 94 565 IPR004504 GO:0003684|GO:0005524|GO:0006281
Viun5g03840 577 ProSiteProfiles RecA family profile 1. 173 329 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Viun5g03840 577 PANTHER DNA REPAIR PROTEIN RADA 45 572 - -
Viun5g03840 577 Gene3D - 186 388 IPR027417 -
Viun5g03840 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 379 IPR027417 -
Viun5g03840 577 Pfam Subunit ChlI of Mg-chelatase 456 542 - -
Viun5g03840 577 Pfam AAA domain 190 333 - -
Viun5g03840 577 SUPERFAMILY Ribosomal protein S5 domain 2-like 366 571 IPR020568 -
Viun5g03840 577 Gene3D - 398 576 IPR014721 -
Viun5g03840 577 SMART AAA_5 197 355 IPR003593 GO:0016887
Viun5g03840 577 FunFam DNA repair protein RadA 175 386 - -
Viun5g03840 577 Pfam Rubredoxin metal binding domain 99 126 IPR041166 -
Viun5g03840 577 FunFam DNA repair protein radA isogeny 404 574 - -
Viun5g03840 577 CDD RadA_SMS_N 99 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03840 Viun-Chr5 46873759 46884347 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03840 K04485 - gmx:100791181 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03840 5 46873759 46884347 Viun5g03840 5 46873759 46884347 ECH
Viun5g03840 5 46873759 46884347 Viun10g02595 10 39615882 39624299 PCT