Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02595 ATGTTTTCCCACTCCATTTGTAGTTTCCCTCCATTCCTACTCCGCAGGGCGGATCCAAAAGTAAGTGCAAGCTTTGGCAATGACACCCCGCAGGACCCCAATTCAACCAATGCTAAGTTTGATGAAGAATTTCGAAAGGGAAAGCAAAGAGGGAGAGTGGTGGGTGGTAGTGATGGTGGTGGGGGGGTTGTTATTGGGAAGAAGAAGAAGTCGAAGGAGAAAGTTGAATGGGTTTGCAGCAATTGTGGGTACAGTGCAGGACAATGGTGGGGCGTGTGCCGTTCATGCAATGTATCAGGAACTATGAAAGAGGCCAAATTCAGCAGTGATGCTGGTAGTATGATTAGTGGGTTTTCAGTATTAGAGGATGGCGTGGGATCGTGGCTACCGCAACAGGAAGGAGAGTTACGTCCCTTGAGATTGGCAGAGGTAAACCGGGGACTTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCATTTGGAGATGAAATTTCCAGAGTGCTTGGTGGTGGTCTAGTACCAGGCTCATTGACTTTAGTTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTTTTGCTGCAGATAGCTTCAATTATTGCAGAACGGCACCATGATGATGGAGCATCTCCAGTTGTATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGATCGTCTTAGGATTCAATCAGATATTTATTTATACTCAAGTAATGATGTTGAGGACATATTGAAGAAAGTTCAGCATCTCTCCCCTGGGGCTCTAATTGTTGATTCAATACAAACTGTTTATTTAAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAGCTTTACTCCGATTTGCAAAGAAGACAAACATCCCAGTTCTTCTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGAGTTTTGGAGCATATTGTTGATGTTGTTCTGTATATGGAAGGTGAGAAATACTCTTCCCATCGTATGCTTCGAGCTGTGAAAAACCGATTTGGATCCACAGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTATTTCAAATGCTAGTGAAATGTTTCTCAGTGAGCAACATCTGGATTCAGAAGTTTTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTTCTTATTGAAATTCAGGCACTTTGTCTTTCTAGTTCAACAGGTTCAAGGCAAGTTAATGGTATCCAATTAAATAGAGCTGATATGATCATATCCGTTCTTATAAAGCAAGCTGGTCTTCGTCTCCGAGAACATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACACTGGCTGAGACTGCTGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATTCCAATTCCAAATGACATTGCATTTATCGGTGAAATTGGCCTCGGTGGTGAGCTTCGCATGGTTCATAGAATGGATAAAAGGGTATATACCGTTGCCAAATTGGGTTTCAGAATGTGCATAGTGCCCAAGGTGGCTGAAAAAGCTTTAGGAACTGAAGGTTTAGAAAAGATGAAAGTCGTTGGTTGCAGAAATCTGAAAGAGGTTATTAACACTGTATTTCCCAATATAATGATGAAAAGGAGGTAG 1671 0.4297 MFSHSICSFPPFLLRRADPKVSASFGNDTPQDPNSTNAKFDEEFRKGKQRGRVVGGSDGGGGVVIGKKKKSKEKVEWVCSNCGYSAGQWWGVCRSCNVSGTMKEAKFSSDAGSMISGFSVLEDGVGSWLPQQEGELRPLRLAEVNRGLDHHHWRIPLSGPFGDEISRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIASIIAERHHDDGASPVVYVSGEESVEQIGNRADRLRIQSDIYLYSSNDVEDILKKVQHLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSTDELGVFEMSHSGLQAISNASEMFLSEQHLDSEVLAGLAVAVIMDGSRTFLIEIQALCLSSSTGSRQVNGIQLNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLAETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELRMVHRMDKRVYTVAKLGFRMCIVPKVAEKALGTEGLEKMKVVGCRNLKEVINTVFPNIMMKRR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02595 556 PANTHER DNA REPAIR PROTEIN RADA 41 549 - -
Viun10g02595 556 SMART AAA_5 175 333 IPR003593 GO:0016887
Viun10g02595 556 FunFam DNA repair protein RadA 158 364 - -
Viun10g02595 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 358 IPR027417 -
Viun10g02595 556 NCBIfam DNA repair protein RadA 72 543 IPR004504 GO:0003684|GO:0005524|GO:0006281
Viun10g02595 556 CDD RadA_SMS_N 77 366 - -
Viun10g02595 556 MobiDBLite consensus disorder prediction 38 52 - -
Viun10g02595 556 SUPERFAMILY Ribosomal protein S5 domain 2-like 344 548 IPR020568 -
Viun10g02595 556 Pfam Subunit ChlI of Mg-chelatase 429 518 - -
Viun10g02595 556 Pfam Rubredoxin metal binding domain 77 104 IPR041166 -
Viun10g02595 556 Gene3D - 382 555 IPR014721 -
Viun10g02595 556 Pfam AAA domain 169 311 - -
Viun10g02595 556 ProSiteProfiles RecA family profile 1. 154 307 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Viun10g02595 556 MobiDBLite consensus disorder prediction 23 59 - -
Viun10g02595 556 PRINTS DNA repair protein radA signature 263 287 - -
Viun10g02595 556 PRINTS DNA repair protein radA signature 167 195 - -
Viun10g02595 556 PRINTS DNA repair protein radA signature 412 435 - -
Viun10g02595 556 PRINTS DNA repair protein radA signature 302 330 - -
Viun10g02595 556 PRINTS DNA repair protein radA signature 337 363 - -
Viun10g02595 556 PRINTS DNA repair protein radA signature 79 103 - -
Viun10g02595 556 Gene3D - 163 364 IPR027417 -
Viun10g02595 556 FunFam DNA repair protein radA isogeny 382 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02595 Viun-Chr10 39615882 39624299 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02595 K04485 - gmx:100794165 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02595 10 39615882 39624299 Viun10g02595 10 39615882 39624299 ECH
Viun5g03840 5 46873759 46884347 Viun10g02595 10 39615882 39624299 PCT