Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03816 ATGAGATGTGGTTTAGATTCAATGTCCTGGATATGGAGACAACTGGTTTTTGAAAAAAGAACACTGTTAAGAAACAGGTGCAGGTTTATCTACAACTCCAACCTTGTTGATGAAATAGTTATAACGTGTCCGCCGCGAAACTCAACATTCCGTCGCACAGTGCTTGGTCGGTGCAGCGTGAAGGGTGGAACCAGCGGCGAAATGGCGAGCATTTCAAACTTAACCAACGCTCTGCCACTGCATATTCGAAGGTTTCGACCTTGTGGCTATGCTTCTTCTCTGTCTACTCTCTCTTGTTCTCTCGCTGAGGACGTCGACCCCAAACCACCCATTCCCAAACCTAATTCGTTCTTCCCGAAGCGTGGCCAAACCCTTGAACTCGTGTGCGAGTCCCTCGCCTTCAAAGGCAAGGGCCTCTGCAAGGTCACCGAAACCGGCTTCGTTGTCATGTGTGACCGCGCCCTTCCCGGAGAACACTTCATTGGCCGCGTCACTCGCAAAAAGGGAAATTACGCCGAGGTAACTAAGGTGAAGACCATAACTCCTCCACGCGATATTGTGGATGCTCCTTGTGTTTACGCTCCGTATTGTGGAGGCTGCAAGACGCAGAACTTGTCCTACGAGGCTCAGCTCAGAGCCAAGGAGGAGCAGGTCCGTGACTTGTTGATTCACGTGGGAAGGTTTTCGCGCGAACTGGTTCAGTTGCACGGCGTTATGAAGCCTATTGTAGCTTGTGATATCCAGTTTCATTATAGGAATAAGATGGAATTCTCCTTTGGTCCCCAAAGATGGCTGCCTAGAGAATCACTGCATGAACGACGTGTTGATGATGCTGATAATGAAAATGAGAATTTTGCGCTGGGATTGCATGCTCCGGGTTTTTTTGATAAAATTCTAAATGTTGACAAGTGCTTATTGCAATCTCATCCTGCTAATAAGGTACTTGCAGCCATCCAAGAATGTTGGAGAGATCCACAACTTGGTTTTTCTCCATATAATGTTCATTCACACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAGGGATATCACAACTGGTCAGCCTGAAGTTATGGTCAACTTTGTGAGCTCTTCCTACAAGCCAGACCTGTTGAAGTTCCTTGTTGATAAAGCTTCTGCATTTCCTGAAGTGGTTAGTGTCATGAATAATGTAAATACTTCTGTCGGTAACACATCGGTTGGAGAGGAAGAATATACTTTGTATGGGAAATCTAGCATCAGAGAGACCTTAAGAGGCCTTACATTCCAAATATCAGCAAACTCTTTCTTTCAAACAAACACTTATCAGGCAGAGGTTTTATATAAGCTTATAGAAGATTGTGCTGGTGTCAAGGGTGATGGCTCAGAAATAGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGGGTAAGGCATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCGCAGATGCTTGTCTTAATGCCAAGATAAATGGCATACAAAATGCAACATTTATCCAGGGAGATCTCAATAAAATTGATGAAAATTTTGGGAAGAATTTTCCTAAACCTGATATCGTCATTTCAGATCCCAATCGTCCAGGAATGCACATGAAGTTGATTAAATTCCTGCTTAATCTTAAGGCACCTCGCATAGTGTATGTGTCATGTAATCCTGCCACATGTGCACGTGATCTTGATTTTCTTTGTCATGGCGTGGCCGAACAGAATATAGAAGGATGTTACAAGCTGATAAGCCTACAGCCAGTTGACATGTTCCCACACACACCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTCAGTAA 1836 0.4461 MRCGLDSMSWIWRQLVFEKRTLLRNRCRFIYNSNLVDEIVITCPPRNSTFRRTVLGRCSVKGGTSGEMASISNLTNALPLHIRRFRPCGYASSLSTLSCSLAEDVDPKPPIPKPNSFFPKRGQTLELVCESLAFKGKGLCKVTETGFVVMCDRALPGEHFIGRVTRKKGNYAEVTKVKTITPPRDIVDAPCVYAPYCGGCKTQNLSYEAQLRAKEEQVRDLLIHVGRFSRELVQLHGVMKPIVACDIQFHYRNKMEFSFGPQRWLPRESLHERRVDDADNENENFALGLHAPGFFDKILNVDKCLLQSHPANKVLAAIQECWRDPQLGFSPYNVHSHKGFLKHLMLRTGRDITTGQPEVMVNFVSSSYKPDLLKFLVDKASAFPEVVSVMNNVNTSVGNTSVGEEEYTLYGKSSIRETLRGLTFQISANSFFQTNTYQAEVLYKLIEDCAGVKGDGSEIVLDLFCGTGTIGLTLARRVRHVYGYEVVPQAIADACLNAKINGIQNATFIQGDLNKIDENFGKNFPKPDIVISDPNRPGMHMKLIKFLLNLKAPRIVYVSCNPATCARDLDFLCHGVAEQNIEGCYKLISLQPVDMFPHTPHIECVCLLELQ 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03816 611 ProSiteProfiles TRAM domain profile. 118 178 IPR002792 -
Viun5g03816 611 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 198 611 IPR010280 GO:0006396|GO:0008173
Viun5g03816 611 FunFam 23S rRNA (Uracil-5-)-methyltransferase RumA 252 432 - -
Viun5g03816 611 CDD AdoMet_MTases 460 558 - -
Viun5g03816 611 SUPERFAMILY Nucleic acid-binding proteins 113 173 IPR012340 -
Viun5g03816 611 Gene3D - 252 432 - -
Viun5g03816 611 FunFam RNA methyltransferase family protein 115 197 - -
Viun5g03816 611 Pfam tRNA (Uracil-5-)-methyltransferase 420 609 IPR010280 GO:0006396|GO:0008173
Viun5g03816 611 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 187 609 IPR029063 -
Viun5g03816 611 Gene3D Vaccinia Virus protein VP39 199 605 IPR029063 -
Viun5g03816 611 PANTHER RNA M5U METHYLTRANSFERASE 114 610 IPR010280 GO:0006396|GO:0008173
Viun5g03816 611 Gene3D - 114 197 IPR012340 -
Viun5g03816 611 FunFam 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD 408 605 - -
Viun5g03816 611 ProSitePatterns RNA methyltransferase trmA family signature 2. 593 603 IPR030391 -
Viun5g03816 611 NCBIfam 23S rRNA (uracil-5-)-methyltransferase RlmD 296 603 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03816 - - vun:114183834 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03816 5 46717715 46724642 Viun10g02575 10 39517027 39522578 PCT