Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02575 ATGAATTTCTTCAACTTGGTCTCTTTGTTCATTGTTTTTCACGTTTTTGCTGCAACACCTCGCATCTTCTCGTTAACAGATTCATCCACAGAACCCCCTATCAACTTTCTAGATGCTGCCAAGAAGCCTGAGGTATTTGACTATATGGTAGGAATCAGAAGGAAGATTCACGAGAATCCAGAATTGGGTTATGAGGAATTTGAGACCAGTAAATTGATTAGAGCAGAATTGGATCAACTGGGTATACCCTATAAACACCCACTTGCAATAACTGGTATAATTGGCTTCATTGGGACTGGAAGATCGCCTTTTGTTGCTATCAGAGCTGATATGGATGCTCTCCCCATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGTCATGATGCTCATGTGGCTATGCTTCTCGGTGCTGCGAAGATTCTTAAACATCATGAAAAAGAGATACAAGGAACTGTAGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGGGGAGCCAAGAAAATTGTGGAGGCTGGAGCCTTAGAAAATGTTACAGCTATTTTTGGATTGCATGTGTCACGTGACTTCCCATTAGGTGAAGTGGGCTCTAGGTCTGGTCCAATGTTGGCAGGAAATGGTTTTTTTGAAGCTATAATAAGGGGAAAAGGAGGTCATGCAGCTATTCCTCAACAATCTATAGACCCTATATTGGCAACTTCTAATGTTATAATTAGCTTACAGAATCTTGTTTCTCGCGAGGCTGACCCTCTGGATTCCCAGGTTGTGACTGTAGGAAAATTCCAAGGAGGTAGTGCATTCAATATCATTCCAGATTCTGTCACGATCGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGCTTCCAGCAATTAAGACACCGCATTGAGCAGGTTGTGATTGCACAAGCTGCTGTGCAGAGGTGCAATGCAACAGTGAACTTCCTTCAAGACCTGAATCCTTTCTTTCCCGTAACCATAAACGATGATGACTTGCATCAACATTTTCGGAGTGTTGCAGGGAATTTGCTTGGCGTGGATAAAGTAAATGACATGCAACCATTGATGGGAGCTGAAGACTTTTCATTCTATCAAGAGGTTATACCTGGCTACTTTTTCATGGTTGGAATGCAGAATGCTTCACATGAAAAACTTGAGCAGGTACACTCACCCTATTTCAAAGTCAATGAAGATGTTCTTCCTTATGGAGCTGCACTTCATGCCTCATTAGCTGTTAGTTATCTTCTGAAAAATCCGCAGGACATAGCCCCTGCAGAGGGGAAATATCATGATGAATTGTAA 1329 0.4266 MNFFNLVSLFIVFHVFAATPRIFSLTDSSTEPPINFLDAAKKPEVFDYMVGIRRKIHENPELGYEEFETSKLIRAELDQLGIPYKHPLAITGIIGFIGTGRSPFVAIRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKHHEKEIQGTVVLVFQPAEEGGGGAKKIVEAGALENVTAIFGLHVSRDFPLGEVGSRSGPMLAGNGFFEAIIRGKGGHAAIPQQSIDPILATSNVIISLQNLVSREADPLDSQVVTVGKFQGGSAFNIIPDSVTIGGTFRAFSKESFQQLRHRIEQVVIAQAAVQRCNATVNFLQDLNPFFPVTINDDDLHQHFRSVAGNLLGVDKVNDMQPLMGAEDFSFYQEVIPGYFFMVGMQNASHEKLEQVHSPYFKVNEDVLPYGAALHASLAVSYLLKNPQDIAPAEGKYHDEL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02575 442 CDD M20_IAA_Hyd 49 424 IPR044757 GO:0009850|GO:0016787
Viun10g02575 442 Gene3D Zn peptidases 49 409 - -
Viun10g02575 442 Pfam Peptidase family M20/M25/M40 106 420 IPR002933 GO:0016787
Viun10g02575 442 NCBIfam amidohydrolase 49 411 IPR017439 GO:0016787
Viun10g02575 442 FunFam N-acetyldiaminopimelate deacetylase 214 332 - -
Viun10g02575 442 SUPERFAMILY Zn-dependent exopeptidases 44 426 - -
Viun10g02575 442 Gene3D - 214 332 - -
Viun10g02575 442 PANTHER PEPTIDASE M20 FAMILY MEMBER 29 429 IPR017439 GO:0016787
Viun10g02575 442 Pfam Peptidase dimerisation domain 216 313 IPR011650 -
Viun10g02575 442 SUPERFAMILY Bacterial exopeptidase dimerisation domain 214 333 IPR036264 -
Viun10g02575 442 PIRSF Amidohydrol_AmhX 35 428 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02575 Viun-Chr10 39517027 39522578 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02575 K21604 - gmx:100789077 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02575 10 39517027 39522578 Viun10g02575 10 39517027 39522578 ECH
Viun5g03816 5 46717715 46724642 Viun10g02575 10 39517027 39522578 PCT