Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03791 ATGCAAATGGACCATTGTTGTTCCACTCAGCTTATTGATGGAGATGGTACAATCAATGTTGCCGGAATCGAAAACTTCATGAAAGAAGTTAAGTTAGGTGAATGTGGGCTTTCCTATGCCGTAGTTTCTATAATGGGTCCTCAAAGTAGTGGCAAGAGTACACTCTTAAATTCTTTGTTTAATACCAACTTCAGAGAGATGGATGCATTTAAAGGAAGGTCTCAAACAACCAAAGGAATTTGGATGGCTAAATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAGCGTGGAGAGGATGACACTGCATTTGAAAAGCAGAGTGCTTTATTTGCTTTGGCCATTTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGCGAACAAGCTGCAAATAAGCCTCTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACATTGCTGTTTGTCATACGTGACAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGCCCATAAGGAAACCCCATTAAGTGATTTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACAATTTAAGGAACAGGTTGCCAACTTGAGGAAACGATTCCAGCATTCTATCGCTCCCGGTGGCCTTGCAGGGGATCGACGTGGAGTGGTTCCTGCTTCTGGCTTTTCTTTTAGTGCTCAGGAAATCTGGAAAATCATTAAGGAGAATAAGGATCTCGACCTTCCCGCACACAAGGTCATGGTTGCTACTGTTCGATGTGAAGAAATTGCTAATGAGAAATATGACCTTTTTGTTTCAAATAAGGACTGGTGTGAGTTGAAAGAGGCTGTGCAATCTGGCCCTATTTCTGGTTTTGGGAAAAATCTCAATTCAATCCTTACCACTTGTCTTTCAGAATATGATGCTGAAGCCAATTATTTTGACGAAGGTGTCAGAACGGCAAAGCAAAAGCAACTTCAAGAAAAACTGTTGCAACTTGCCCAACCAGCATTCCAAACTGCGCTGGGACATGTAAGGTCCATAGTTTTTGATAAGTTCAAGGAAGCATTTGACAAGGCTTTGAATGGAGGGCAAGGGTTTTCTTCTGCTGCTAATAGGTGCGTAGAGTCTTGTATGGCTAAGTTTGACGAAGGATGTGCAGATGTTGTCATTGAAATAGCCGACTGGGATACATCTAAAGTGAGGGAGAAGCTACGGCGTGATGTTGATGCACATGTCTTATCTGTCCGTGCATCTAAGATATCAGAACTAGTTTCATCATATGAGGAACAACTGAAGGAGGCATTATCTGCACCTGTTGAAACTCTATTGGATGGAGCTAATAGTGATACTTGGCCATCGATAAGGAAACTTCTTAAACGTGAGACTCTAGCAGCTGTTTCTGGGTTCTCTTTGGAACTTGACAGATATGATATGGATGAAGAAACAAAAAATAGCATGATTGTGACTTTAGAGGATTATGCAAAGGGTGTGATAGAAGCCAGGGCTAGGGAAGAGGCTGGCAGAGTTCTAATCCGTATGAAGGACAGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGTAATGAAGATATTCGAGCCATCACAAAGTCTTCCCGCTCTTCATGCTTGAAGTTGCTGTCTGTAATGGCTGTAATTCGTTTGGCTGATGCTGATGATATTTATGATATAGAGAAAACATTAACAGTCGCATTGACAGATTCATCAAGCGATGCTGGTAAAGAGAAGAGCATCACGACACTCGATCCACTGGCTTCAAGCACTTGGGAGCAGGTCCCATCCACTAAAACATTGATCACACCTGTCCAGTGCAAATCATTGTGGAGGCAATTCAAGATAGAGACAGAATATACTGTGTCTCAGGCCATTGCTGCACAGGAAGCAAACAATCGTAGCAACAATTGGTTACCTCCACCATGGGCAATTGTTGCTTTGCTTATTCTTGGATTTAATGAATTTATGACAGTTTTAAGAAATCCCTTGTATATAGGTGTCATCTTTGTTGGCTATCTTCTCTTGAAAGCCCTATGGGTGCAGCTTGACGTTGCGGGAGAATTTCAAAATGGAGCTCTTCCAGGACTCATCTCCTTGTCTAGCAAGTTTGTTCCAATTATCATGAACCTTATGAGAAAACTAGCAGAGGAGGCACAGAATGCTGCAGCCGATGACCATAGTGGAAATTCATCAAAACGCTATGAGAGGCCTGTTCCTTCTGGTAGAGTTACATCATCGAGTTCTTCTTCTCGTGTGACTTCTATGGGTAATAGAACTGACTCATCCGAGTATATCAGTCAATTAAAAGAAGAGTAG 2445 0.4172 MQMDHCCSTQLIDGDGTINVAGIENFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNSLFNTNFREMDAFKGRSQTTKGIWMAKCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSDFFIVEVVALSSFEEKEEQFKEQVANLRKRFQHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYDLFVSNKDWCELKEAVQSGPISGFGKNLNSILTTCLSEYDAEANYFDEGVRTAKQKQLQEKLLQLAQPAFQTALGHVRSIVFDKFKEAFDKALNGGQGFSSAANRCVESCMAKFDEGCADVVIEIADWDTSKVREKLRRDVDAHVLSVRASKISELVSSYEEQLKEALSAPVETLLDGANSDTWPSIRKLLKRETLAAVSGFSLELDRYDMDEETKNSMIVTLEDYAKGVIEARAREEAGRVLIRMKDRFMTLFSHDSDSMPRIWTGNEDIRAITKSSRSSCLKLLSVMAVIRLADADDIYDIEKTLTVALTDSSSDAGKEKSITTLDPLASSTWEQVPSTKTLITPVQCKSLWRQFKIETEYTVSQAIAAQEANNRSNNWLPPPWAIVALLILGFNEFMTVLRNPLYIGVIFVGYLLLKALWVQLDVAGEFQNGALPGLISLSSKFVPIIMNLMRKLAEEAQNAAADDHSGNSSKRYERPVPSGRVTSSSSSSRVTSMGNRTDSSEYISQLKEE 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03791 814 PANTHER PROTEIN SEY1 3 775 IPR008803 -
Viun5g03791 814 Gene3D - 13 244 IPR027417 -
Viun5g03791 814 MobiDBLite consensus disorder prediction 764 814 - -
Viun5g03791 814 Hamap Protein SEY1 [SEY1]. 8 765 IPR008803 -
Viun5g03791 814 CDD GBP 35 218 - -
Viun5g03791 814 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 17 272 - -
Viun5g03791 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 247 IPR027417 -
Viun5g03791 814 MobiDBLite consensus disorder prediction 783 806 - -
Viun5g03791 814 Pfam Sey1 three-helix bundle domain 322 760 IPR046758 -
Viun5g03791 814 Coils Coil 217 237 - -
Viun5g03791 814 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 45 280 - -
Viun5g03791 814 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 36 251 IPR030386 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03791 Viun-Chr5 46581477 46591552 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03791 K22698 - gmx:100797516 1333.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03791 5 46581477 46591552 Viun10g02532 10 39206394 39215330 PCT