Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02532 ATGGCGGATAGTGATTCTTGTTGTTCAACTCAAATTCTTGACGGAGATGGTGTATACAATGTTTCTGGGGTTGACAACTTTATGAAGGAGGTGAAGTTGGCTGATTGTGGGCTTTCGTATGCTGTAGTTTCTATAATGGGTCCACAAAGTAGTGGCAAGAGCACACTATTAAATAATTTGTTTCGTACCAACTTCAGAGAGATGGATGCTTTCAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGCAATGGCATAGAGCCTTGTACAATTGTTATGGATTTGGAGGGTACTGATGGAAGAGAACGTGGAGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTATCAGATATTGTGTTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTAAAAACTGTCTTTCAAGTCATGATGAGATTGTTTAGTCCACGAAAAACAACACTGTTGTTTGTCATACGTGATAAAACAAGGACGCCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGATTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGTGAATTTTTCAACGTTGAGGTTGTTGCACTTTCTAGTTTTGAAGAAAAGGAAGAGCAATTTAGAGAGCAGGTTGCCAGTTTGCGGCAACGATTCCACCATTCCATTGCTCCTGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCCGCTTCTGGATTTTCATTTAGTTGCCAGGAAATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTTCGATGTGAAGAAATCACCGATGAGAAATATGCCGCTTTTTCTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGACCCTGTTCCTGGATTTGGGAGAAAGCTCAGTTCACTCCTTGGTACTTGTTTATCAGAGTATGATGCTGAAGCCGCCTTTTTTGATGAAGGTGTGAGAACTGCCAAACAAAAGCAACTACAAGAAAAATTGTTCCAACTTGTCCACCCAGCATTCCAATCTGCGTTGGGACATATAAGATCTGGAACTTTGGATAAATTCAAGGCGGCATTTGACAAGGCTTTGAATGGAGGGGAAGGGTTTTCTATGGCTGCTAGGAAATGCAGTGGGTCATGTATGGTTCAATTTGACGAAGCATGTGCAGATATTGTTATTGAACAAGCAAACTGGGATACATCTAAAGTGCGAGAGAAATTGGTGAGGGACATTGATGCACATATTGCAGCTGTGCGTGCAGCCAAGATTTCTGAACTTACTTCATCATATGAGGAAAAACTTAAACAAGCTTTGTCTGGACCTGTTGAAGCTCTTTTGGACGGAGCTAATAGTGATACTTGGTCATCAATAAGGAACCTTCTTAAGCGTGAGACTTTATCAGCTGTTTCAGGGTTCTCTGCTGAACTTATTGGGTTTGATATGGATGATGAAACAAGACAGAACATGCTTAAAAGTTTAGAGGATTATGCAAGAGGTCTGGTAGAAGGAAAGGCAAAGGAAGAAGTAGGAAGAGTTCTAATCCGCATGAAGGACAGGTTTACAATGTTGTTTAGTCATGATGCTGATTCAATGCCTCGTGTTTGGACGGGTAAAGAAGATATACGATCCATCACCAAGACTGCTCGTTCTTCTTCTTTGAAGTTGCTATCTGTCATGGCTGCAATTCGTTTGGATGATAATGACTCTGACAATATTGAGAAAGTGTTAGCAGTTGCTTTGGTGGAACCAGCACCAAGCAGTAATGGTACAAGGAGCATGACAGTGGTTGATCCACTAGCTTCTAGCAGCTGGGAAGAGGTTTCTTCTTCCAAAACATTGATTACGCCTGTTCAGTGCAAGTCTTTGTGGAGGCAATTCAGGACAGAGACAGAGTACACTGTCTCTCAAGCCATTGCTGCACAGGAAGCAAGCAAGCGCAACAACAACTGGTTACCTCCCCCTTGGGCGATAGCTGCTTTGGTTATCCTAGGATTTAATGAATTTATGACACTTCTAAGAAACCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTTATTAAAGCCCTATGGGTGCAGCTTGACATCTCGGGTGAATTTCGCAATGGAGCCCTTCCGGCAATCATTTCCTTGTCTACCAAGTTTGTTCCAACTATCATGAACATCATGAAAAAACTAGCAGAGGAGGGACAGAACCATGCAGCTAACAATCCTCAGAGAACTCCATCAAAAAACAGTTTCAACGACAGTAACGCCGACTCGTCAAGCTCGTCATCTAGCCTGACTGCATTGGACAACGGAACAGAGTATGACGGCCCACTTAAAGATGAATAG 2427 0.4265 MADSDSCCSTQILDGDGVYNVSGVDNFMKEVKLADCGLSYAVVSIMGPQSSGKSTLLNNLFRTNFREMDAFKGRSQTTKGIWMARCNGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSFEEKEEQFREQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSCQEIWKVIKENKDLDLPAHKVMVATVRCEEITDEKYAAFSANEDWCQLEEAVQSDPVPGFGRKLSSLLGTCLSEYDAEAAFFDEGVRTAKQKQLQEKLFQLVHPAFQSALGHIRSGTLDKFKAAFDKALNGGEGFSMAARKCSGSCMVQFDEACADIVIEQANWDTSKVREKLVRDIDAHIAAVRAAKISELTSSYEEKLKQALSGPVEALLDGANSDTWSSIRNLLKRETLSAVSGFSAELIGFDMDDETRQNMLKSLEDYARGLVEGKAKEEVGRVLIRMKDRFTMLFSHDADSMPRVWTGKEDIRSITKTARSSSLKLLSVMAAIRLDDNDSDNIEKVLAVALVEPAPSSNGTRSMTVVDPLASSSWEEVSSSKTLITPVQCKSLWRQFRTETEYTVSQAIAAQEASKRNNNWLPPPWAIAALVILGFNEFMTLLRNPLYLGVIFVGYLLIKALWVQLDISGEFRNGALPAIISLSTKFVPTIMNIMKKLAEEGQNHAANNPQRTPSKNSFNDSNADSSSSSSSLTALDNGTEYDGPLKDE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02532 808 CDD GBP 34 239 - -
Viun10g02532 808 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Viun10g02532 808 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Viun10g02532 808 Coils Coil 218 238 - -
Viun10g02532 808 Hamap Protein SEY1 [SEY1]. 9 762 IPR008803 -
Viun10g02532 808 Gene3D - 26 248 IPR027417 -
Viun10g02532 808 MobiDBLite consensus disorder prediction 763 797 - -
Viun10g02532 808 PANTHER PROTEIN SEY1 5 783 IPR008803 -
Viun10g02532 808 MobiDBLite consensus disorder prediction 762 808 - -
Viun10g02532 808 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Viun10g02532 808 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Viun10g02532 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 277 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02532 Viun-Chr10 39206394 39215330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02532 K22698 - gmx:100777656 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03791 5 46581477 46591552 Viun10g02532 10 39206394 39215330 PCT